Browse code

added crlmmDownstream.pdf to inst/scripts

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/crlmm@48649 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 03/08/2010 08:04:07
Showing4 changed files

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@@ -40,9 +40,8 @@ citEntry(entry="article",
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   journal = "Biostatistics",
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   year = "2010",
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   textVersion = paste("Scharpf RB, Ruczinski I, Carvalho B, Doan B, Chakravarti A, Irizarry RA",
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-                      "A multilevel model to address batch effects in copy number estimation
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-		      using SNP arrays"
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-                      "Biostatistics. 2010."))
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+                      "A multilevel model to address batch effects in copy number estimation using SNP arrays",
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+		      "Biostatistics. 2010."))
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 citFooter("We have invested a lot of time and effort in creating crlmm,",
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           "please cite it when using it for data analysis.")
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@@ -1,9 +1,9 @@
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 All: copynumber crlmmDownstream clean
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-copynumber: copynumber.tex
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+copynumber: copynumber.pdf
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 	cp -p ../scripts/copynumber.pdf .
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-crlmmDownstream: crlmmDownstream.tex
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+crlmmDownstream: crlmmDownstream.pdf
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 	cp -p ../scripts/crlmmDownstream.pdf .
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 clean:
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@@ -45,7 +45,7 @@ are assumed to be in the current directory. First, we identify the
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 files and run \Rmethod{crlmm}. The results will be saved to the
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 variable \Robject{crlmmResult}.
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 <<lkd>>=
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-library(oligoClasses}
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+library(oligoClasses)
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 library(crlmm)
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 celFiles <- list.celfiles()
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 celFiles[1:4]
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new file mode 100644
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