git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@87035 bc3139a8-67e5-0310-9ffc-ced21a209358
Sonali Arora authored on 04/03/2014 22:12:21 | ... | ... |
@@ -1,58 +1,34 @@ |
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Package: crlmm |
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Type: Package |
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-Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays. |
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-Version: 1.21.5 |
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-Date: Mon Feb 3 09:02:42 EST 2014 |
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-Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo Ruczinski, Rafael A Irizarry |
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-Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU> |
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-Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms |
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+Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for |
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+ Affymetrix SNP 5.0 and 6.0 and Illumina arrays. |
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+Version: 1.21.6 |
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+Date: Mon Feb 3 09:02:42 EST 2014 |
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+Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo |
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+ Ruczinski, Rafael A Irizarry |
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+Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, |
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+ Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie |
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+ <mritchie@wehi.EDU.AU> |
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+Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 |
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+ arrays, as well as a copy number tool specific to 5.0, 6.0, and |
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+ Illumina platforms |
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License: Artistic-2.0 |
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-Depends: R (>= 2.14.0), oligoClasses (>= 1.21.12), preprocessCore (>= 1.17.7) |
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+Depends: R (>= 2.14.0), oligoClasses (>= 1.21.12), preprocessCore (>= |
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+ 1.17.7) |
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LinkingTo: preprocessCore (>= 1.17.7) |
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-Imports: methods, |
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- Biobase (>= 2.15.4), |
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- BiocGenerics, |
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- affyio (>= 1.23.2), |
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- illuminaio, |
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- ellipse, |
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- mvtnorm, |
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- splines, |
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- stats, |
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- SNPchip, |
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- utils, |
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- lattice, |
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- ff, |
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- foreach, |
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- RcppEigen (>= 0.3.1.2.1), |
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- matrixStats, |
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- VGAM |
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-Suggests: hapmapsnp6, |
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- genomewidesnp6Crlmm (>= 1.0.7), |
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- GGdata, |
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- snpStats, |
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- ellipse, |
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- RUnit, |
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- VGAM |
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-Collate: AllGenerics.R |
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- AllClasses.R |
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- methods-AssayData.R |
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- methods-CNSet.R |
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- methods-CNSetLM.R |
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- methods-eSet.R |
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- methods-SnpSuperSet.R |
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- methods-PredictionRegion.R |
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- cnrma-functions.R |
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- cnset-accessors.R |
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- crlmm-functions.R |
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- crlmmGT2.R |
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- crlmm-illumina.R |
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- krlmm.R |
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- snprma-functions.R |
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- utils.R |
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- zzz.R |
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- test_crlmm_package.R |
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+Imports: methods, Biobase (>= 2.15.4), BiocGenerics, affyio (>= |
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+ 1.23.2), illuminaio, ellipse, mvtnorm, splines, stats, SNPchip, |
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+ utils, lattice, ff, foreach, RcppEigen (>= 0.3.1.2.1), |
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+ matrixStats, VGAM |
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+Suggests: hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.7), GGdata, snpStats, |
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+ ellipse, RUnit, VGAM |
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+Collate: AllGenerics.R AllClasses.R methods-AssayData.R methods-CNSet.R |
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+ methods-CNSetLM.R methods-eSet.R methods-SnpSuperSet.R |
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+ methods-PredictionRegion.R cnrma-functions.R cnset-accessors.R |
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+ crlmm-functions.R crlmmGT2.R crlmm-illumina.R krlmm.R |
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+ snprma-functions.R utils.R zzz.R test_crlmm_package.R |
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LazyLoad: yes |
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-biocViews: Microarray, Preprocessing, SNP, Bioinformatics,CopyNumberVariants |
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## Local Variables: |
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## time-stamp-pattern: "8/Date: %3a %3b %2d %02H:%02M:%02S %Z %:y\n" |
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## End: |
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+biocViews: Microarray, Preprocessing, SNP, CopyNumberVariation |