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Added scanDate slot to Biobase's eSet class, added functionality in affy to utilize the new scanDate slot and updated all the packages that create direct subclasses of eSet, ExpressionSet or NChannelSet.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@40196 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 18/06/2009 00:00:30
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 Package: crlmm
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 Type: Package
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 Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
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-Version: 1.3.3
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-Date: 2008-12-30
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+Version: 1.3.4
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+Date: 2009-06-17
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 Author: Rafael A Irizarry, Benilton S Carvalho <bcarvalh@jhsph.edu>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
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 Maintainer: Benilton S Carvalho <bcarvalh@jhsph.edu>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
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 Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 6.0.
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 License: Artistic-2.0
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-Imports: affyio, preprocessCore, utils, stats, genefilter, splines, Biobase, mvtnorm
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-Suggests: hapmapsnp5, genomewidesnp5Crlmm (>= 1.0.2), genomewidesnp6Crlmm (>= 1.0.2), methods, GGdata, snpMatrix
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+Imports: affyio, preprocessCore, utils, stats, genefilter, splines, Biobase (>= 2.5.3), mvtnorm
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+Suggests: hapmapsnp5, hapmapsnp6, genomewidesnp5Crlmm (>= 1.0.2), genomewidesnp6Crlmm (>= 1.0.2), methods, GGdata, snpMatrix
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 Collate: AllClasses.R
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          methods-SnpSet.R
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-	 cnrma-functions.R
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+         cnrma-functions.R
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          crlmm-functions.R
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          crlmm-illumina.R
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          snprma-functions.R