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Merge branch 'collab'

* collab:
bump crlmm version
add alias for coercing CNSet to oligoSnpSet

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@62631 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 08/02/2012 13:58:34
Showing2 changed files

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 Package: crlmm
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 Type: Package
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 Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
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-Version: 1.13.8
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+Version: 1.13.9
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 Date: 2010-12-10
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 Author: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.edu.au>, Ingo Ruczinski <iruczins@jhsph.edu>, Rafael A Irizarry
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 Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
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@@ -1,6 +1,7 @@
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 \name{CNSet-methods}
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 \Rdversion{1.1}
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 \docType{methods}
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+\alias{coerce,CNSet,oligoSnpSet-method}
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 \alias{CA,CNSet-method}
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 \alias{CB,CNSet-method}
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 \alias{lines,CNSet-method}
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@@ -33,8 +34,11 @@
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 \section{Methods}{
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   \describe{
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+    \item{}{\code{as(from, "oligoSnpSet")}: Method for coercing object
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+      \code{from} (class \code{CNSet}) to an object of class
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+      \code{oligoSnpSet}.}
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     \item{CA}{\code{signature(object="CNSet")}: calculates raw copy number
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-  for allele A}
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+      for allele A}
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     \item{CB}{\code{signature(object="CNSet")}: calculates raw copy
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   number for allele B}
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     \item{lines}{\code{signature(x="CNSet")}: plot ellipses (95th