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All pdfs in inst/doc should be generated from the first target of the Makefile

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@58911 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 08/10/2011 14:08:06
Showing2 changed files

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 Package: crlmm
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 Type: Package
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 Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
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-Version: 1.11.53
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+Version: 1.11.54
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 Date: 2010-12-10
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 Author: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.edu.au>, Ingo Ruczinski <iruczins@jhsph.edu>, Rafael A Irizarry
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 Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
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-All: copynumber crlmmDownstream clean
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+All: copynumber clean
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+## all pdfs must be generated from the first target of the Makefile
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 copynumber: copynumber.tex
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 	cp ../scripts/copynumber.pdf .
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 	cp ../scripts/AffymetrixPreprocessCN.pdf .
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 	cp ../scripts/IlluminaPreprocessCN.pdf .
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 	cp ../scripts/Infrastructure.pdf .
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-
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-crlmmDownstream: crlmmDownstream.tex
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 	cp ../scripts/crlmmDownstream.pdf .
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+	texi2dvi --pdf genotyping.tex
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+	texi2dvi --pdf CopyNumberOverview.tex
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 clean:
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 	-$(RM) -f *.out *.bbl *.log *.aux *.blg *.brf *.toc *.tex