@@ -20,7 +20,8 @@ Imports: affyio (>= 1.19.2),

          splines,

          stats,

          SNPchip,

-         utils

+         utils,

+	 lattice

 Suggests: hapmapsnp6,

           genomewidesnp6Crlmm (>= 1.0.4),

           snpMatrix,

@@ -34,6 +34,8 @@ importFrom(oligoClasses, chromosome2integer, celfileDate, list.celfiles,

 importFrom(graphics, abline, axis, layout, legend, mtext, par, plot,

            polygon, rect, segments, text, points, boxplot, lines)

+importFrom(lattice, xyplot, simpleKey, panel.grid, panel.xyplot, lrect, ltext,

+	   lpoints, panel.number, lpolygon)

 importFrom(grDevices, grey)

 importFrom(affyio, read.celfile.header, read.celfile)

@@ -59,7 +61,6 @@ importClassesFrom(oligoClasses, ff_matrix, ffdf)

 ##---------------------------------------------------------------------------

 ##import(panel.number, panel.grid, panel.xyplot, lpoints, lsegments, lrect, ltext)

-

 exportMethods(lines)

 exportMethods(CA, CB)

 export(crlmm,

@@ -74,6 +75,6 @@ export(crlmm,

        genotype2, genotypeLD,

        genotype.Illumina,

        crlmmCopynumber2, crlmmCopynumberLD, crlmmCopynumber)

-export(genotypes, totalCopynumber, rawCopynumber)

-exportMethods(A, B, calculatePosteriorMean, corr, nuA, nuB, phiA, phiB, predictionRegion, posteriorProbability, tau2, Ns, medians, mads)

-export(constructInf, preprocessInf, genotypeInf)

+export(genotypes, totalCopynumber, rawCopynumber, xyplot)

+exportMethods(A, B, calculatePosteriorMean, corr, nuA, nuB, phiA, phiB, predictionRegion, posteriorProbability, tau2, Ns, medians, mads, xyplot)

+export(ABpanel, constructInf, preprocessInf, genotypeInf)