Browse code

Import lattice and several lattice methods. Export ABpanel function

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@58636 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 01/10/2011 04:47:29
Showing2 changed files

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@@ -20,7 +20,8 @@ Imports: affyio (>= 1.19.2),
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          splines,
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          stats,
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          SNPchip,
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-         utils
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+         utils,
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+	 lattice
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 Suggests: hapmapsnp6,
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           genomewidesnp6Crlmm (>= 1.0.4),
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           snpMatrix,
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@@ -34,6 +34,8 @@ importFrom(oligoClasses, chromosome2integer, celfileDate, list.celfiles,
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 importFrom(graphics, abline, axis, layout, legend, mtext, par, plot,
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            polygon, rect, segments, text, points, boxplot, lines)
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+importFrom(lattice, xyplot, simpleKey, panel.grid, panel.xyplot, lrect, ltext,
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+	   lpoints, panel.number, lpolygon)
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 importFrom(grDevices, grey)
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 importFrom(affyio, read.celfile.header, read.celfile)
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@@ -59,7 +61,6 @@ importClassesFrom(oligoClasses, ff_matrix, ffdf)
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 ##---------------------------------------------------------------------------
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 ##import(panel.number, panel.grid, panel.xyplot, lpoints, lsegments, lrect, ltext)
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-
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 exportMethods(lines)
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 exportMethods(CA, CB)
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 export(crlmm,
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@@ -74,6 +75,6 @@ export(crlmm,
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        genotype2, genotypeLD,
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        genotype.Illumina,
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        crlmmCopynumber2, crlmmCopynumberLD, crlmmCopynumber)
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-export(genotypes, totalCopynumber, rawCopynumber)
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-exportMethods(A, B, calculatePosteriorMean, corr, nuA, nuB, phiA, phiB, predictionRegion, posteriorProbability, tau2, Ns, medians, mads)
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-export(constructInf, preprocessInf, genotypeInf)
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+export(genotypes, totalCopynumber, rawCopynumber, xyplot)
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+exportMethods(A, B, calculatePosteriorMean, corr, nuA, nuB, phiA, phiB, predictionRegion, posteriorProbability, tau2, Ns, medians, mads, xyplot)
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+export(ABpanel, constructInf, preprocessInf, genotypeInf)