Browse code

Add empty vignettes for copy number vignettes to inst/doc. Update VignetteIndexEntry.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@54326 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 31/03/2011 16:51:58
Showing7 changed files

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+%\VignetteIndexEntry{Preprocessing and genotyping Affymetrix array for copy number analysis}
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+%\VignetteDepends{}
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+%\VignetteKeywords{crlmm, SNP 6}
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+%\VignettePackage{crlmm}
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+
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+%%% The real .Rnw is under inst/scripts.
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+%%% It cannot be added here because it depends on external
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+%%% data not yet available as a BioC package
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+\documentclass{article}
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+\begin{document}
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+\end{document}
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-%\VignetteIndexEntry{crlmm copy number Vignette}
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-%\VignetteDepends{crlmm, genomewidesnp6Crlmm}
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-%\VignetteKeywords{crlmm, SNP 6}
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+%\VignetteIndexEntry{Overview of copy number vignettes}
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+%\VignetteDepends{}
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+%\VignetteKeywords{}
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 %\VignettePackage{crlmm}
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 \documentclass{article}
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 \usepackage{graphicx}
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+%\VignetteIndexEntry{Preprocessing and genotyping Illumina arrays for copy number analysis}
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+%\VignetteDepends{}
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+%\VignetteKeywords{crlmm, copy number}
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+%\VignettePackage{crlmm}
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+
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+%%% The real .Rnw is under inst/scripts.
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+%%% It cannot be added here because it depends on external
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+%%% data not yet available as a BioC package
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+\documentclass{article}
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+\begin{document}
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+\end{document}
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+%\VignetteIndexEntry{Infrastructure for copy number analysis}
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+%\VignetteDepends{crlmm, genomewidesnp6Crlmm}
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+%\VignetteKeywords{crlmm, SNP 6, copy number}
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+%\VignettePackage{crlmm}
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+
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+%%% The real .Rnw is under inst/scripts.
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+%%% It cannot be added here because it depends on external
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+%%% data not yet available as a BioC package
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+\documentclass{article}
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+\begin{document}
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+\end{document}
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\ No newline at end of file
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@@ -1,6 +1,6 @@
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-%\VignetteIndexEntry{crlmm Vignette - Copy Number}
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-%\VignetteDepends{crlmm, genomewidesnp6Crlmm}
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-%\VignetteKeywords{crlmm, SNP 6}
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+%\VignetteIndexEntry{Copy number estimation}
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+%\VignetteDepends{}
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+%\VignetteKeywords{crlmm, SNP 6, copy number}
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 %\VignettePackage{crlmm}
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 %%% The real .Rnw is under inst/scripts.
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-%\VignetteIndexEntry{AffymetrixPreprocessCN Vignette for Affymetrix}
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+%\VignetteIndexEntry{Preprocessing and genotyping Affymetrix arrays
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+%for copy number analysis}
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 %\VignetteDepends{crlmm, genomewidesnp6Crlmm, cacheSweave, ff}
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 %\VignetteKeywords{crlmm, SNP 6, copy number, SNP}
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 %\VignettePackage{crlmm}
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@@ -1,4 +1,4 @@
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-%\VignetteIndexEntry{Infrastructure for crlmm copy number Vignette}
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+%\VignetteIndexEntry{Infrastructure for copy number analysis}
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 %\VignetteDepends{crlmm, genomewidesnp6Crlmm}
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 %\VignetteKeywords{crlmm, SNP 6}
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 %\VignettePackage{crlmm}