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replace BiocInstaller biocLite mentions with BiocManager

LiNk-NY authored on 30/08/2018 17:47:04
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@@ -2,7 +2,7 @@ Package: crlmm
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 Type: Package
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 Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for
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         Affymetrix SNP 5.0 and 6.0 and Illumina arrays
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-Version: 1.39.0
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+Version: 1.39.1
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 Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo
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         Ruczinski, Rafael A Irizarry
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 Maintainer: Benilton S Carvalho <benilton@unicamp.br>,
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@@ -48,8 +48,9 @@ information used by CRLMM is stored in the \Rpackage{human370v1cCrlmm} package.
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 The required packages can be installed in the usual way using the \Rfunction{biocLite} function.
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 <<echo=TRUE, results=hide, eval=FALSE>>=
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-source("http://www.bioconductor.org/biocLite.R")
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-biocLite(c("crlmm", "hapmap370k", "human370v1cCrlmm"))
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+if (!requireNamespace("BiocManager", quietly=TRUE))
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+    install.packages("BiocManager")
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+BiocManager::install(c("crlmm", "hapmap370k", "human370v1cCrlmm"))
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 @
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 \section{Reading in data}