git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@43732 bc3139a8-67e5-0310-9ffc-ced21a209358
Rob Scharp authored on 23/12/2009 12:55:31
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@@ -354,3 +354,8 @@ is decoded and scanned |
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2009-12-23 R. Scharpf - commited version 1.5.17 |
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** updated first half of inst/scripts/copynumber.Rnw, as well as a few of the help files |
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+2009-12-23 R. Scharpf - commited version 1.5.18 |
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+** removed generics for addFeatureAnnotation and GT<- |
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@@ -1,7 +1,7 @@ |
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Package: crlmm |
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Type: Package |
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Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays. |
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-Version: 1.5.17 |
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+Version: 1.5.18 |
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Date: 2009-12-23 |
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Author: Rafael A Irizarry, Benilton S Carvalho <bcarvalh@jhsph.edu>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.edu.au> |
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Maintainer: Benilton S Carvalho <bcarvalh@jhsph.edu>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU> |
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@@ -1,16 +1,12 @@ |
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setGeneric("A", function(object) standardGeneric("A"))
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setGeneric("B", function(object) standardGeneric("B"))
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-setGeneric("A<-", function(object, value) standardGeneric("A<-"))
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-setGeneric("B<-", function(object, value) standardGeneric("B<-"))
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-setGeneric("addFeatureAnnotation", function(object, ...) standardGeneric("addFeatureAnnotation"))
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+##setGeneric("A<-", function(object, value) standardGeneric("A<-"))
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+##setGeneric("B<-", function(object, value) standardGeneric("B<-"))
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setGeneric("getParam", function(object, name, batch) standardGeneric("getParam"))
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-setGeneric("GT<-", function(object, value) standardGeneric("GT<-"))
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setGeneric("cnIndex", function(object) standardGeneric("cnIndex"))
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setGeneric("cnNames", function(object) standardGeneric("cnNames"))
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setGeneric("computeCopynumber", function(object, cnOptions) standardGeneric("computeCopynumber"))
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-##setGeneric("GT", function(object, ...) standardGeneric("GT"))
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-setGeneric(".harmonizeDimnames", function(object) standardGeneric(".harmonizeDimnames"))
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setGeneric("pr", function(object, name, batch, value) standardGeneric("pr"))
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setGeneric("snpIndex", function(object) standardGeneric("snpIndex"))
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setGeneric("snpNames", function(object) standardGeneric("snpNames"))
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