git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@54278 bc3139a8-67e5-0310-9ffc-ced21a209358
Rob Scharp authored on 31/03/2011 00:40:56
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Package: crlmm |
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Type: Package |
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Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays. |
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-Version: 1.9.23 |
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+Version: 1.9.24 |
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Date: 2010-12-10 |
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Author: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.edu.au>, Ingo Ruczinski <iruczins@jhsph.edu>, Rafael A Irizarry |
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Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU> |
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} |
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} |
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+\section{Changes in version 1.8}{
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+ \subsection{USER VISIBLE CHANGES}{
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+ \itemize{
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+ |
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+ \item define CNSet class with batch and batchStatistics slots |
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+ |
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+ \item deprecate CNSetList class |
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+ |
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+ \item deprecate crlmmWrapper, genotype2, and crlmmCopynumber2. |
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+ Use crlmmCopynumber in place of crlmmWrapper and crlmmCopynumber2. |
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+ Use genotype instead of genotype2. |
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+ |
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+ \item raw copy number estimates no longer stored in container. CA |
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+ and CB methods are no longer simple accessors to data stored in |
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+ the eset-extension. These functions compute raw copy number |
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+ estimates from the linear model parameters. |
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+ |
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+ } |
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+ } |
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+} |
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+ |
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\section{Changes in version 1.3}{
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\subsection{USER VISIBLE CHANGES}{
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\itemize{
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