git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@48938 bc3139a8-67e5-0310-9ffc-ced21a209358
Rob Scharp authored on 21/08/2010 02:48:14
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@@ -28,7 +28,7 @@ importClassesFrom(oligoClasses, SnpSuperSet, AlleleSet, CNSet) |
| 28 | 28 |
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| 29 | 29 |
importMethodsFrom(oligoClasses, allele, calls, "calls<-", confs, |
| 30 | 30 |
"confs<-", cnConfidence, "cnConfidence<-", isSnp, |
| 31 |
- chromosome, position, CA, "CA<-", CB, "CB<-", A, B, |
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+ chromosome, position, A, B, |
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| 32 | 32 |
"A<-", "B<-", open, close) |
| 33 | 33 |
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| 34 | 34 |
importFrom(oligoClasses, chromosome2integer, celfileDate, list.celfiles, |
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@@ -16,4 +16,8 @@ setGeneric("phi", function(object, allele) standardGeneric("phi"))
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| 16 | 16 |
setGeneric("sigma2", function(object, allele) standardGeneric("sigma2"))
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| 17 | 17 |
setGeneric("tau2", function(object, allele) standardGeneric("tau2"))
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| 18 | 18 |
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+setGeneric("CA", function(object) standardGeneric("CA"))
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+setGeneric("CB", function(object) standardGeneric("CB"))
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+setGeneric("totalCopyNumber", function(object, i, j, ...) standardGeneric("totalCopyNumber"))
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+ |
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| 19 | 23 |
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