git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@48939 bc3139a8-67e5-0310-9ffc-ced21a209358
Rob Scharp authored on 21/08/2010 02:48:17
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@@ -16,8 +16,8 @@ setGeneric("phi", function(object, allele) standardGeneric("phi"))
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setGeneric("sigma2", function(object, allele) standardGeneric("sigma2"))
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setGeneric("tau2", function(object, allele) standardGeneric("tau2"))
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| 18 | 18 |
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-setGeneric("CA", function(object) standardGeneric("CA"))
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-setGeneric("CB", function(object) standardGeneric("CB"))
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+setGeneric("CA", function(object, i, j, ...) standardGeneric("CA"))
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+setGeneric("CB", function(object, i, j, ...) standardGeneric("CB"))
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setGeneric("totalCopyNumber", function(object, i, j, ...) standardGeneric("totalCopyNumber"))
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| 22 | 22 |
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@@ -237,14 +237,17 @@ setMethod("corr", c("CNSetLM", "character"), function(object, allele){
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return(res) |
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}) |
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-setMethod("CB", "CNSet", function(object){
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- ##assayDataElement(object, "CB") |
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- browser() |
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-}) |
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-setMethod("CA", "CNSet", function(object) {
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- browser() |
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- ##assayDataElement(object, "CA") |
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-}) |
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+setMethod("CB",
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+ signature=signature(object="CNSet", i="integerOrMissing", j="integerOrMissing"), |
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+ function(object, i, j){
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+ ##assayDataElement(object, "CB") |
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+ browser() |
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+ }) |
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+setMethod("CA",
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+ signature=signature(object="CNSet", i="integerOrMissing", j="integerOrMissing"), |
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+ function(object, i, j) {
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+ browser() |
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+ }) |
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| 248 | 251 |
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setMethod("totalCopyNumber",
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signature=signature(object="CNSet", i="integerOrMissing", j="integerOrMissing"), |