@@ -1123,13 +1123,12 @@ genotype.Illumina = function(sampleSheet=NULL,

         pkgname = getCrlmmAnnotationName(cdfName)

 #        if(missing(outdir))

 #          stop("Must specify a directory to store large data objects")

-	callSet = construct.Illumina(sampleSheet=sampleSheet, arrayNames=arrayNames,

-			                 ids=ids, path=path, arrayInfoColNames=arrayInfoColNames,

-                             highDensity=highDensity, sep=sep, fileExt=fileExt,

-			                 cdfName=cdfName, copynumber=copynumber, verbose=verbose, batch=batch, # fns=fns, 

-                             saveDate=saveDate) #, outdir=outdir)

+	callSet <- construct.Illumina(sampleSheet=sampleSheet, arrayNames=arrayNames,

+				      ids=ids, path=path, arrayInfoColNames=arrayInfoColNames,

+				      highDensity=highDensity, sep=sep, fileExt=fileExt,

+				      cdfName=cdfName, copynumber=copynumber, verbose=verbose, batch=batch, # fns=fns, 

+				      saveDate=saveDate) #, outdir=outdir)

 	if(missing(sns)) sns = sampleNames(callSet)

-    

     if(is.lds) {

 		open(A(callSet))

 		open(B(callSet))

@@ -1328,4 +1327,4 @@ processIDAT =  function(sel, sampleSheet=NULL,

         rm(res)

 		gc()

         TRUE

-      }

\ No newline at end of file

+      }