git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/crlmm@71168 bc3139a8-67e5-0310-9ffc-ced21a209358
Rob Scharp authored on 13/11/2012 20:03:34 | ... | ... |
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Package: crlmm |
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Type: Package |
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Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays. |
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-Version: 1.16.5 |
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+Version: 1.16.6 |
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Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo Ruczinski, Rafael A Irizarry |
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Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU> |
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Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms |
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Affymetrix 5.0 and 6.0 platforms, as well as several Illumina |
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platforms. This vignette assumes that the arrays have already been |
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successfully preprocessed and genotyped as per the instructions in |
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- the \verb+AffymetrixPreprocessCN+ and \verb+IlluminaPreprocessCN+ |
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+ the \verb+AffyGW+ and \verb+IlluminaPreprocessCN+ |
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vignettes for the Affymetrix and Illumina platforms, |
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respectively. While this vignette uses Affymetrix 6.0 arrays for |
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illustration, the steps at this point are identical for both |