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remove reference to AffymetrixPreprocessCN.Rnw vignette in copynumber.Rnw file

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/crlmm@71168 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 13/11/2012 20:03:34
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 Package: crlmm
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 Type: Package
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 Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
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-Version: 1.16.5
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+Version: 1.16.6
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 Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo Ruczinski, Rafael A Irizarry
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 Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
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 Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
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   Affymetrix 5.0 and 6.0 platforms, as well as several Illumina
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   platforms.  This vignette assumes that the arrays have already been
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   successfully preprocessed and genotyped as per the instructions in
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-  the \verb+AffymetrixPreprocessCN+ and \verb+IlluminaPreprocessCN+
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+  the \verb+AffyGW+ and \verb+IlluminaPreprocessCN+
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   vignettes for the Affymetrix and Illumina platforms,
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   respectively. While this vignette uses Affymetrix 6.0 arrays for
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   illustration, the steps at this point are identical for both