git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@48921 bc3139a8-67e5-0310-9ffc-ced21a209358
Rob Scharp authored on 21/08/2010 02:47:07
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new file mode 100644 |
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+## Need to submit from a fat node! |
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+all: illumina_copynumber, copynumber |
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+ |
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+copynumber: copynumber.Rnw |
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+ echo "Stangle(\"copynumber.Rnw\")" | R --no-save --no-restore; |
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+ cat ~/bin/cluster.template | perl -pe "s/Rprog/copynumber.R/" > copynumber.R.sh |
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+ qsub -m e -r y -cwd -l mem_free=10G copynumber.R.sh |
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+ |
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+texcopynumber: copynumber.tex |
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+ texi2dvi --pdf --clean --quiet copynumber.tex |
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+ |
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+illumina_copynumber: illumina_copynumber.Rnw |
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+ echo "Stangle(\"illumina_copynumber.Rnw\")" | R --no-save --no-restore; |
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+ cat ~/bin/cluster.template | perl -pe "s/Rprog/illumina_copynumber.R/" > illumina_copynumber.R.sh |
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+ qsub -m e -r y -cwd -l mem_free=10G illumina_copynumber.R.sh |
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+ |
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+texillumina_copynumber: illumina_copynumber.tex |
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+ texi2dvi --pdf --clean --quiet illumina_copynumber.tex |
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+ |
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+clean: |
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+ -rm *.tex *.aux *.sh *.Rout |