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Commit id: 7a7b52509b1e09bf8d3f517244f90f9045d102ca
Commit message: Set enough.men and enough.women to FALSE by default in fit.lm3 function.
Committed by: Rob Scharpf
Author Name: Rob Scharpf
Commit date: 2014-08-25 21:44:19 -0400
Author date: 2014-08-25 21:44:19 -0400



git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@93599 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 26/08/2014 01:45:03
Showing3 changed files

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@@ -2,8 +2,8 @@ Package: crlmm
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 Type: Package
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 Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for
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         Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
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-Version: 1.23.1
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-Date: Mon 10 Jun 2014 15:10:27 EST
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+Version: 1.23.2
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+Date: Mon Aug 25 21:43:53 EDT 2014
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 Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo
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         Ruczinski, Rafael A Irizarry
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 Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>,
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@@ -1034,7 +1034,8 @@ fit.lm3 <- function(strata,
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 		medianB.Flist <- res[["medianB"]]
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 		NN.Flist <- res[["NN"]]
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 		rm(res)
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-	}
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+              }
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+        enough.men <- enough.women <- FALSE
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 	for(k in seq_along(batches)){
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 		sample.index <- batches[[k]]
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 		if(is.null(sample.index)) next()
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@@ -2844,4 +2845,3 @@ calculateRTheta <- function(object, ##genotype=c("AA", "AB", "BB"),
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 	lrr <- integerMatrix(lrr, 100)
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 	return(list(baf=bf, lrr=lrr))
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 }
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-
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@@ -225,4 +225,3 @@ dim(bafList[[1]]) ## B allele frequencies for chromosome 1
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 If the \Rfunction{crlmmCopynumber} function is not run prior to the
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 \Rfunction{BafLrrSetList} construction, the log R ratios and BAFs will
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 be initialized as NAs.
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-