Package: crlmm
Type: Package
Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Version: 1.5.9
Date: 2009-12-03
Author: Rafael A Irizarry, Benilton S Carvalho <bcarvalh@jhsph.edu>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.edu.au>
Maintainer: Benilton S Carvalho <bcarvalh@jhsph.edu>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
License: Artistic-2.0
Depends: methods, Biobase (>= 2.5.5), R (>= 2.10.0)
Imports: affyio, preprocessCore, utils, stats, genefilter, splines, mvtnorm, oligoClasses (>= 1.9.9), ellipse, methods, SNPchip, oligoClasses, VanillaICE (>= 1.9.1), IRanges
Suggests: hapmapsnp5, hapmapsnp6, genomewidesnp5Crlmm (>= 1.0.2),genomewidesnp6Crlmm (>= 1.0.2), snpMatrix
Collate: AllGenerics.R
	 methods-CNSet.R
	 methods-eSet.R
         methods-SnpSuperSet.R
         methods-SnpSet.R
         methods-AlleleSet.R
         cnrma-functions.R
         crlmm-functions.R
         crlmm-illumina.R
         snprma-functions.R
         utils.R
         zzz.R
LazyLoad: yes
biocViews: Microarray, Preprocessing, SNP, Bioinformatics