Package: crlmm
Type: Package
Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Version: 1.11.14
Date: 2010-12-10
Author: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.edu.au>, Ingo Ruczinski <iruczins@jhsph.edu>, Rafael A Irizarry
Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
License: Artistic-2.0
Depends: R (>= 2.13.0),
         methods,
         Biobase (>= 2.11.9),
         oligoClasses (>= 1.13.22)
Imports: affyio (>= 1.19.2),
         ellipse,
         ff (>= 2.2-1),
         genefilter (>= 1.33.0),
         mvtnorm,
         preprocessCore (>= 1.13.4),
         splines,
         stats,
         SNPchip,
         utils
Suggests: hapmapsnp6,
          genomewidesnp6Crlmm (>= 1.0.4),
          snpMatrix,
	  ellipse,
	  RUnit
Collate: AllGenerics.R
	 AllClasses.R
	 methods-AssayData.R
	 methods-CNSet.R
	 methods-CNSetLM.R
	 methods-eSet.R
         methods-SnpSuperSet.R
         cnrma-functions.R
	 cnset-accessors.R
         crlmm-functions.R
	 crlmmGT2.R
         crlmm-illumina.R
	 snprma-functions.R
	 plot-methods.R
         utils.R
         zzz.R
	 test_crlmm_package.R
LazyLoad: yes
biocViews: Microarray, Preprocessing, SNP, Bioinformatics, CopyNumberVariants
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Packaged: 2011-04-30 17:10:59 UTC; biocbuild
>>>>>>> crlmm on github