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Package: crlmm
Type: Package
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| b5bb7de9 |
Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
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| ea8dfe72 |
Version: 1.16.2
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| ad3cc706 |
Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo Ruczinski, Rafael A Irizarry
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| 4d061283 |
Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
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| bf8acd05 |
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
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| 04bd5f4c |
License: Artistic-2.0
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| e31c7794 |
Depends: R (>= 2.14.0), oligoClasses (>= 1.19.39)
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Imports: methods,
Biobase (>= 2.15.4),
BiocGenerics,
affyio (>= 1.23.2),
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| 9ac2da3a |
ellipse,
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genefilter (>= 1.37.1),
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| a3335242 |
mvtnorm,
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preprocessCore (>= 1.17.7),
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| 9ac2da3a |
splines,
stats,
SNPchip,
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| 82cb251d |
utils,
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| 7c0c9ac5 |
lattice,
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| 063b3d14 |
ff,
foreach
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| 9ac2da3a |
Suggests: hapmapsnp6,
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| bc16630e |
genomewidesnp6Crlmm (>= 1.0.4),
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| 2124212a |
GGdata,
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| 8abbd107 |
snpStats,
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| 453e688a |
ellipse,
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| 7c0c9ac5 |
RUnit
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Collate: AllGenerics.R
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| a3335242 |
AllClasses.R
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| 6846d583 |
methods-AssayData.R
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| 96d10c6e |
methods-CNSet.R
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| c8d44fee |
methods-CNSetLM.R
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| 38fb1b80 |
methods-eSet.R
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| bc16b510 |
methods-SnpSuperSet.R
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| cd6d42f6 |
methods-PredictionRegion.R
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| babcd2c8 |
cnrma-functions.R
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| e516fadb |
cnset-accessors.R
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| 2366cbbc |
crlmm-functions.R
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| 5b19b0f1 |
crlmmGT2.R
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| cd8b85b6 |
crlmm-illumina.R
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| e1909d6b |
snprma-functions.R
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| 6a218440 |
utils.R
zzz.R
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| 453e688a |
test_crlmm_package.R
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LazyLoad: yes
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| 8f4e2eab |
biocViews: Microarray, Preprocessing, SNP, Bioinformatics, CopyNumberVariants
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