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Package: crlmm
Type: Package
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Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
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Version: 1.21.0
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Date: Tue Oct 01 14:48:41 EDT 2013
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Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo Ruczinski, Rafael A Irizarry
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Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
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Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
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License: Artistic-2.0
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Depends: R (>= 2.14.0), oligoClasses (>= 1.21.12), preprocessCore (>= 1.17.7)
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LinkingTo: preprocessCore (>= 1.17.7)
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Imports: methods,
Biobase (>= 2.15.4),
BiocGenerics,
affyio (>= 1.23.2),
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illuminaio,
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ellipse,
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mvtnorm,
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splines,
stats,
SNPchip,
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utils,
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lattice,
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ff,
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foreach,
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RcppEigen (>= 0.3.1.2.1),
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matrixStats,
VGAM
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Suggests: hapmapsnp6,
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genomewidesnp6Crlmm (>= 1.0.7),
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GGdata,
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snpStats,
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ellipse,
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RUnit,
VGAM
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Collate: AllGenerics.R
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AllClasses.R
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methods-AssayData.R
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methods-CNSet.R
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methods-CNSetLM.R
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methods-eSet.R
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methods-SnpSuperSet.R
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methods-PredictionRegion.R
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cnrma-functions.R
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cnset-accessors.R
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crlmm-functions.R
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crlmmGT2.R
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crlmm-illumina.R
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krlmm.R
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snprma-functions.R
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utils.R
zzz.R
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test_crlmm_package.R
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LazyLoad: yes
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biocViews: Microarray, Preprocessing, SNP, Bioinformatics,CopyNumberVariants
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