##setGeneric("batch", function(object) standardGeneric("batch"))
 ##setGeneric("getParam", function(object, name, batch) standardGeneric("getParam"))

 setGeneric("cnIndex", function(object) standardGeneric("cnIndex"))
 setGeneric("cnNames", function(object) standardGeneric("cnNames"))

 setGeneric("computeCopynumber", function(object, ...) standardGeneric("computeCopynumber"))

 ##setGeneric("pr", function(object, name, batch, value) standardGeneric("pr"))

 setGeneric("snpIndex", function(object) standardGeneric("snpIndex"))
 setGeneric("snpNames", function(object) standardGeneric("snpNames"))

 setGeneric("CA", function(object, ...) standardGeneric("CA"))
 setGeneric("CB", function(object, ...) standardGeneric("CB"))
 ##setGeneric("totalCopyNumber", function(object, ...) standardGeneric("totalCopyNumber"))

 
 
 ## The generics below are for internal use with copy number methods
 ## If we keep them in oligoClasses, we need to export and document
 setGeneric("nuA", function(object) standardGeneric("nuA"))

 setGeneric("nuB", function(object) standardGeneric("nuB"))

 setGeneric("phiA", function(object) standardGeneric("phiA"))
 setGeneric("phiB", function(object) standardGeneric("phiB"))
 setGeneric("sigma2A", function(object) standardGeneric("sigma2A"))
 setGeneric("sigma2B", function(object) standardGeneric("sigma2B"))
 setGeneric("tau2A", function(object) standardGeneric("tau2A"))
 setGeneric("tau2B", function(object) standardGeneric("tau2B"))
 setGeneric("corrAA", function(object) standardGeneric("corrAA"))
 setGeneric("corrBB", function(object) standardGeneric("corrBB"))
 setGeneric("corrAB", function(object) standardGeneric("corrAB"))
 setGeneric("nuA<-", function(object, value) standardGeneric("nuA<-"))
 setGeneric("nuB<-", function(object, value) standardGeneric("nuB<-"))
 setGeneric("phiA<-", function(object, value) standardGeneric("phiA<-"))
 setGeneric("phiB<-", function(object, value) standardGeneric("phiB<-"))
 setGeneric("sigma2A<-", function(object, value) standardGeneric("sigma2A<-"))
 setGeneric("sigma2B<-", function(object, value) standardGeneric("sigma2B<-"))
 setGeneric("tau2A<-", function(object, value) standardGeneric("tau2A<-"))
 setGeneric("tau2B<-", function(object, value) standardGeneric("tau2B<-"))
 setGeneric("corrAA<-", function(object, value) standardGeneric("corrAA<-"))
 setGeneric("corrAB<-", function(object, value) standardGeneric("corrAB<-"))
 setGeneric("corrBB<-", function(object, value) standardGeneric("corrBB<-"))

 setGeneric("flags<-", function(object, value) standardGeneric("flags<-"))
 
 setGeneric("numberGenotype<-", function(object, value, ...) standardGeneric("numberGenotype<-"))