#include <R.h>
 #include <R_ext/Rdynload.h>
 #include "crlmm.h"

 #include <Rinternals.h>

 
 static const R_CallMethodDef CallEntries[] = {
     {"gtypeCallerPart1", (DL_FUNC)&gtypeCallerPart1, 17},
     {"gtypeCallerPart2", (DL_FUNC)&gtypeCallerPart2, 19},

     {"normalizeBAF", (DL_FUNC)&normalizeBAF, 2},

     {"krlmmComputeM", (DL_FUNC)&krlmmComputeM, 2},
     {"krlmmComputeS", (DL_FUNC)&krlmmComputeS, 2},
     {"readGenCallOutputCFunc", (DL_FUNC)&readGenCallOutputCFunc, 8},
     {"krlmmConfidenceScore", (DL_FUNC)&krlmmConfidenceScore, 2},
     {"krlmmHardyweinberg", (DL_FUNC)&krlmmHardyweinberg, 1},
     {"countFileLines", (DL_FUNC)&countFileLines, 1},

     {NULL, NULL, 0}
 };
 

 void R_init_crlmm(DllInfo *dll){

     R_registerRoutines(dll, NULL, CallEntries, NULL, NULL);

 }

 
 SEXP subColSummarizeMedianPP(SEXP RMatrix, SEXP R_rowIndexList){
   static SEXP(*fun)(SEXP, SEXP) = NULL;
   if (fun == NULL)
     fun =  (SEXP(*)(SEXP, SEXP))R_GetCCallable("preprocessCore","R_subColSummarize_median");
   return fun(RMatrix, R_rowIndexList);
 }