\name{ABpanel}
 \alias{ABpanel}
 \title{A panel function for plotting prediction regions and
   log-normalized intensities
 }
 \description{
   A panel function for plotting prediction regions and
   log-normalized intensities
 }
 \usage{
 ABpanel(x, y, predictRegion, copyNumber = 0:4, fill, ..., subscripts)
 }
 %- maybe also 'usage' for other objects documented here.
 \arguments{
   \item{x}{
     log-normalized intensities for the A or B allele
 }
 \item{y}{
       log-normalized intensities for the A or B allele
 }
   \item{predictRegion}{
     A \code{list}. See \code{predictionRegion}.
 }
   \item{copyNumber}{
     Integer vector.  Indicates which prediction regions are drawn.
 }
   \item{fill}{
     Character or integer vector for coloring the points.  Only valid for
     certain point symbols.  See \code{points}.
 }
   \item{\dots}{

     Additional arguments to \code{panel.xyplot} and \code{lpolygon}.

 }
   \item{subscripts}{
     See \code{xyplot} in the \pkg{lattice} package.
 }
 }

 \value{
   Not applicable
 }
 
 \note{
 
   \code{ABpanel} can be passed as the argument to panel in the
   \code{xyplot} method for \code{CNSet} objects.  See the examples in
   \code{xyplot}.
 
 }
 
 \author{
 R. Scharpf
 }
 
 \seealso{
   \code{\link[lattice]{xyplot}},   \code{\link[lattice]{panel.xyplot}}
   \code{\link[lattice]{lpolygon}}
 }
 
 % Add one or more standard keywords, see file 'KEYWORDS' in the
 % R documentation directory.
 \keyword{aplot}