| 6a218440 |
Package: crlmm
Type: Package
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| b5bb7de9 |
Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
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| b59e8327 |
Version: 1.9.23
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| 99202387 |
Date: 2010-12-10
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| 4d061283 |
Author: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.edu.au>, Ingo Ruczinski <iruczins@jhsph.edu>, Rafael A Irizarry
Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
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| bf8acd05 |
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
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| 04bd5f4c |
License: Artistic-2.0
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| 4d061283 |
Depends: R (>= 2.13.0),
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| a3335242 |
methods,
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| c75c54c0 |
Biobase (>= 2.11.9),
oligoClasses (>= 1.13.11)
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Imports: affyio (>= 1.19.2),
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| 9ac2da3a |
ellipse,
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ff (>= 2.2-1),
genefilter (>= 1.33.0),
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| a3335242 |
mvtnorm,
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| 4d061283 |
preprocessCore (>= 1.13.4),
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| 9ac2da3a |
splines,
stats,
SNPchip,
utils
Suggests: hapmapsnp6,
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| bc16630e |
genomewidesnp6Crlmm (>= 1.0.4),
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| a097b918 |
snpMatrix,
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| 453e688a |
ellipse,
RUnit
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| 5fcfed7d |
Collate: AllGenerics.R
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| a3335242 |
AllClasses.R
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| 6846d583 |
methods-AssayData.R
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| 96d10c6e |
methods-CNSet.R
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| c8d44fee |
methods-CNSetLM.R
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| 38fb1b80 |
methods-eSet.R
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| bc16b510 |
methods-SnpSuperSet.R
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| babcd2c8 |
cnrma-functions.R
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| 2366cbbc |
crlmm-functions.R
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| 5b19b0f1 |
crlmmGT2.R
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| cd8b85b6 |
crlmm-illumina.R
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| e1909d6b |
snprma-functions.R
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| a097b918 |
plot-methods.R
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| 6a218440 |
utils.R
zzz.R
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| 453e688a |
test_crlmm_package.R
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LazyLoad: yes
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| 8f4e2eab |
biocViews: Microarray, Preprocessing, SNP, Bioinformatics, CopyNumberVariants
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