\name{constructAffyCNSet}
 \alias{constructAffyCNSet}
 
 \title{ Construct an object of class CNSet from Affymetrix cel files
 }
 \description{
 Construct a container for normalized intensities for Affymetrix cel
 files, referred to as a \code{CNSet}
 }
 \usage{
 constructAffyCNSet(filenames, sns, cdfName, batch, verbose = TRUE, genome)
 }
 %- maybe also 'usage' for other objects documented here.
 \arguments{
   \item{filenames}{
     Vector of cel file names.
 }
   \item{sns}{
     Sample identifiers. Defaults to \code{basename(filenames)}.
 }
   \item{cdfName}{
     Character string indicating annotation package (e.g., "genomewidesnp6Crlmm")
 }
   \item{batch}{
     Vector of same length as filenames indicating batch.
 }
   \item{verbose}{
     Logical.
 }
   \item{genome}{
     Character string indicating UCSC genome build (hg18 or hg19 supported)
 }
 }
 
 \value{
   An object of class \code{CNSet}
 }
 
 \author{
 R. Scharpf
 }
 % Add one or more standard keywords, see file 'KEYWORDS' in the
 % R documentation directory.
 \keyword{manip}