| 6a218440 |
Package: crlmm
Type: Package
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| b5bb7de9 |
Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
|
| 99202387 |
Version: 1.9.9
Date: 2010-12-10
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| 3c6c270e |
Author: Benilton S Carvalho <carvalho@bclab.org>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.edu.au>, Ingo Ruczinski <iruczins@jhsph.edu>, Rafael A Irizarry
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| 9ac2da3a |
Maintainer: Benilton S Carvalho <carvalho@bclab.org>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
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| bf8acd05 |
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
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| 04bd5f4c |
License: Artistic-2.0
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| a3335242 |
Depends: R (>= 2.11.0),
methods,
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| 81601623 |
Biobase (>= 2.9.0),
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| 438088f2 |
oligoClasses (>= 1.13.5)
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| a3335242 |
Imports: affyio (>= 1.15.2),
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| 9ac2da3a |
ellipse,
ff,
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| a3335242 |
genefilter,
mvtnorm,
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| 9ac2da3a |
preprocessCore,
splines,
stats,
SNPchip,
utils
Suggests: hapmapsnp6,
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| bc16630e |
genomewidesnp6Crlmm (>= 1.0.4),
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| a097b918 |
snpMatrix,
ellipse
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| 5fcfed7d |
Collate: AllGenerics.R
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| a3335242 |
AllClasses.R
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| 6846d583 |
methods-AssayData.R
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| 96d10c6e |
methods-CNSet.R
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| c8d44fee |
methods-CNSetLM.R
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| 38fb1b80 |
methods-eSet.R
|
| bc16b510 |
methods-SnpSuperSet.R
|
| babcd2c8 |
cnrma-functions.R
|
| 2366cbbc |
crlmm-functions.R
|
| cd8b85b6 |
crlmm-illumina.R
|
| e1909d6b |
snprma-functions.R
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| a097b918 |
plot-methods.R
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| 6a218440 |
utils.R
zzz.R
LazyLoad: yes
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| 8f4e2eab |
biocViews: Microarray, Preprocessing, SNP, Bioinformatics, CopyNumberVariants
|
