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Package: crlmm
Type: Package
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Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for
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Affymetrix SNP 5.0 and 6.0 and Illumina arrays
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Version: 1.42.0
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Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo
Ruczinski, Rafael A Irizarry
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Maintainer: Benilton S Carvalho <benilton@unicamp.br>,
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Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie
<mritchie@wehi.EDU.AU>
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0
arrays, as well as a copy number tool specific to 5.0, 6.0, and
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Illumina platforms.
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License: Artistic-2.0
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Depends: R (>= 2.14.0), oligoClasses (>= 1.21.12), preprocessCore (>=
1.17.7)
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LinkingTo: preprocessCore (>= 1.17.7)
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Imports: methods, Biobase (>= 2.15.4), BiocGenerics, affyio (>=
1.23.2), illuminaio, ellipse, mvtnorm, splines, stats, SNPchip,
utils, lattice, ff, foreach, RcppEigen (>= 0.3.1.2.1),
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matrixStats, VGAM, parallel, graphics, limma, beanplot
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Suggests: hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.7), GGdata, snpStats,
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RUnit
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Collate: AllGenerics.R AllClasses.R methods-AssayData.R methods-CNSet.R
methods-CNSetLM.R methods-eSet.R methods-SnpSuperSet.R
methods-PredictionRegion.R cnrma-functions.R cnset-accessors.R
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crlmm-functions.R crlmmGT2.R crlmm-illumina.R krlmm.R plot.R
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snprma-functions.R utils.R zzz.R test_crlmm_package.R
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LazyLoad: yes
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## Local Variables:
## time-stamp-pattern: "8/Date: %3a %3b %2d %02H:%02M:%02S %Z %:y\n"
## End:
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biocViews: Microarray, Preprocessing, SNP, CopyNumberVariation
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