DESCRIPTION
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 Package: crlmm
 Type: Package
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 Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
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 Version: 1.20.1
 Date: Wed Oct 30 21:59:28 EDT 2013
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 Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo Ruczinski, Rafael A Irizarry
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 Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
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 Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
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 License: Artistic-2.0
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 Depends: R (>= 2.14.0), oligoClasses (>= 1.21.12), preprocessCore (>= 1.17.7)
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 LinkingTo: preprocessCore (>= 1.17.7)
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 Imports: methods,
          Biobase (>= 2.15.4),
          BiocGenerics,
          affyio (>= 1.23.2),
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          illuminaio,
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          ellipse,
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          mvtnorm,
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          splines,
          stats,
          SNPchip,
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          utils,
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 	 lattice,
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 	 ff,
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 	 foreach,
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          RcppEigen (>= 0.3.1.2.1),
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 	 matrixStats,
 	 VGAM
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 Suggests: hapmapsnp6,
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           genomewidesnp6Crlmm (>= 1.0.7),
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           GGdata,
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           snpStats,
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 	  ellipse,
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 	  RUnit,
 	  VGAM
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 Collate: AllGenerics.R
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 	 AllClasses.R
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 	 methods-AssayData.R
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 	 methods-CNSet.R
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 	 methods-CNSetLM.R
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 	 methods-eSet.R
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          methods-SnpSuperSet.R
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 	 methods-PredictionRegion.R
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          cnrma-functions.R
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 	 cnset-accessors.R
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          crlmm-functions.R
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 	 crlmmGT2.R
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          crlmm-illumina.R
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          krlmm.R
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 	 snprma-functions.R
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          utils.R
          zzz.R
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 	 test_crlmm_package.R
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 LazyLoad: yes
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 biocViews: Microarray, Preprocessing, SNP, Bioinformatics,CopyNumberVariants
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 ## Local Variables:
 ## time-stamp-pattern: "8/Date: %3a %3b %2d %02H:%02M:%02S %Z %:y\n"
 ## End: