man/posteriorProbability.Rd
 4d748181  \name{posteriorProbability} \alias{posteriorProbability} \alias{posteriorProbability,CNSet-method} %- Also NEED an '\alias' for EACH other topic documented here. \title{Calculate the posterior probability for integer copy numbers.} \description{ Calculate the posterior probability for integer copy numbers using the bivariate normal prediction regions. } \usage{  1821febe  posteriorProbability(object, predictRegion, copyNumber = 0:4, w)  4d748181  } %- maybe also 'usage' for other objects documented here. \arguments{ \item{object}{ A \code{CNSet} object. } \item{predictRegion}{ A list containing the bivariate normal prediction region for each of the possible genotypes. } \item{copyNumber}{ Integer vector.  1821febe  } \item{w}{ numeric vector of prior probabilities for each of the copy number states. Must be the same length as \code{copyNumber} and sum  6dc7b945  to 1.}  1821febe   4d748181  }  3b0b2109  \details{ This is currently under development.  4d748181  }  3b0b2109   4d748181  \value{ An array (features x samples x copy number) } \author{ R. Scharpf }  3b0b2109   4d748181  \note{  3b0b2109  This is under development. Use at your own risk.  4d748181  } %% ~Make other sections like Warning with \section{Warning }{....} ~ \seealso{  3b0b2109  \code{\link{predictionRegion}}, \code{\link{genotypes}} %\code{\link{calculatePosteriorMean}}  4d748181  } \examples{  3b0b2109  data(cnSetExample) pr <- predictionRegion(cnSetExample, copyNumber=0:4) pp <- posteriorProbability(cnSetExample, predictRegion=pr)  aaef0d80  dim(pp)  8e21c728  ## multiple batches  3b0b2109  data(cnSetExample2) pr <- predictionRegion(cnSetExample2, copyNumber=0:4) pp <- posteriorProbability(cnSetExample2, predictRegion=pr)  4d748181  } % Add one or more standard keywords, see file 'KEYWORDS' in the % R documentation directory. \keyword{array}