# Generated by roxygen2: do not edit by hand

export(runBwa)
export(runCrisprBwa)
importFrom(BSgenome,getSeq)
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqnames)
importFrom(Rbwa,bwa_aln)
importFrom(Rbwa,bwa_sam)
importFrom(Rbwa,xa2multi)
importFrom(crisprBase,"spacerLength<-")
importFrom(crisprBase,getPamRanges)
importFrom(crisprBase,getProtospacerRanges)
importFrom(crisprBase,getTargetRanges)
importFrom(crisprBase,hasSpacerGap)
importFrom(crisprBase,isRnase)
importFrom(crisprBase,nucleaseName)
importFrom(crisprBase,pamIndices)
importFrom(crisprBase,pamLength)
importFrom(crisprBase,pamSide)
importFrom(crisprBase,pams)
importFrom(crisprBase,spacerLength)
importFrom(methods,is)
importFrom(readr,read_delim)
importFrom(readr,read_lines)
importFrom(stats,complete.cases)
importFrom(stringr,str_extract)
importFrom(utils,data)
importFrom(utils,write.table)