Bioconductor Code: cqn

Graph of cqn

1daa019 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:37:26 -0400;
acc5c24 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:37:26 -0400;
511115e various import fixes caused by upstream changes by Kasper Daniel Hansen <kasperdanielhansen@gmail.com> 2024-10-15 13:00:40 -0400;
46d54ee bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:24:46 -0400;
dfa58ba (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:24:46 -0400;
ace52ff bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:47:08 -0400;
0d28c43 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:47:08 -0400;
c40192e bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:20:08 -0400;
1c041f3 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:20:08 -0400;
f9fd04c bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:00 -0400;
88555e7 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:00 -0400;
b77f52d bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:08:13 +0000;
f18a16d (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:08:12 +0000;
f4a4146 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:31 +0000;
4762342 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:31 +0000;
0abbfe1 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:49:01 +0000;
0d15ecc (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:49:01 +0000;
930e43b bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:41:55 -0400;
8fe0753 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:41:55 -0400;
b281438 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:25:59 +0000;
f35ba91 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:25:59 +0000;
b7ddde1 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:35:37 -0400;
f0fee89 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:21 -0400;
a5557cd bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:03 -0400;
fb18da1 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:26 -0400;
e51ca3e (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:27:20 -0500;
2be7b98 Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:27:18 -0500;
6c92fcc bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:29 -0400;
a097e0c bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:47 -0400;
7fdec0a bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
c473040 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:19 -0400;
781472b bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:12 -0400;
dfc187e (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:34 -0400;
a839094 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
a4b33eb (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
280658f bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
2d1f788 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
64a00d4 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
4916ffd bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
f22e0d1 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
54b7318 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
bf63ab3 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
c934143 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
382feaf (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
1f1bd60 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
f20fd8c changed maintainer email; bumped version by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2015-05-27 00:25:53 +0000;
9beb563 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
2f324b8 (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
fb470c2 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
bde4c0f Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
b6030cb (origin/RELEASE_3_0, RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
aa6403e Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
b324a74 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
ffe1c47 (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
f0f0042 First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
a81fb6f modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
01e7045 Changed vignette to be in line with this API change, as described by Gordon Smyth: by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-12-03 18:24:52 +0000;
1592270 bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
740666c (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
e732ec9 bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
3fac7b6 Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
d31c4d2 (origin/RELEASE_2_12, RELEASE_2_12) Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
e2644d0 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
618e1e2 fixes to offset, glm.offset by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2013-04-02 14:22:42 +0000;
c1ca376 bump package versions after creating 2.11 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:43:56 +0000;
f20f208 (origin/RELEASE_2_11, RELEASE_2_11) Creating branch for BioC 2.11 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:37:11 +0000;
1550c6d Bump all packages before creating 2.11 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:16:24 +0000;
9306206 fix to plot in vignette. Thanks to Maria Keays [mkeays@ebi.ac.uk] by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2012-08-03 02:02:01 +0000;
43fb48b another fix to make the vignette work after changes to edgeR by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2012-07-03 12:30:56 +0000;
c59bc31 fixes to cqn caused by recent changes in edgeR by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2012-07-03 12:05:52 +0000;
cc69f6b refactoring of the code; new material in the vignette; see NEWS file by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2012-04-30 02:07:24 +0000;
588e87c bumped version numbers after creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:15:56 +0000;
c5d716e (origin/RELEASE_2_10, RELEASE_2_10) Creating branch for BioC 2.10 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:10:45 +0000;
68ffe18 first version bump prior to creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:05:02 +0000;
f7bb809 resaved data files; added edgeR as Suggests: because of the vignette by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2012-03-04 15:26:37 +0000;
c7c8223 updated NEWS by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2012-02-10 08:57:56 +0000;
f1e0d02 (origin/RELEASE_2_9, RELEASE_2_9) ggplot2 no longer exports alpha() - this function now resides in the new scales package (DESCRIPTION and vignette needed to change). Also fixed the argument value of sizeFactors=NULL in cqn() and cqn.fixedlength() by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2012-02-10 08:57:01 +0000;
bebb17e fixed sizeFactors=NULL in cqn() by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2012-02-10 08:49:44 +0000;
8f132e2 alpha has been moved rom ggplot2 to the new package scales; vignette and Suggests: has been changed accordingly by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2012-02-01 02:17:14 +0000;
d31046e version bump for start of 2.10 development cycle by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:12:28 +0000;
d0ac0dd Creating branch for BioC 2.9 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:05:58 +0000;
0ef6a08 bumped package version numbers prior to creating 2.9 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 22:59:03 +0000;
a03efd7 After a bugfix in edgeR, we have now used eval=TRUE for some code chunks in the vignette; they should now work for edgeR-devel. by Kasper D. Hansen <khansen@stat.Berkeley.edu> 2011-07-03 19:18:01 +0000;
3e890c0 Deleted .Rhistory in inst/scripts and inst/doc. Bumped version to 0.99.1. by Chao-Jen Wong <cwon2@fhcrc.org> 2011-06-20 22:08:31 +0000;
a437088 Delete the PDF version of the vignette which can be automatively built by running R CMD build. by Chao-Jen Wong <cwon2@fhcrc.org> 2011-06-20 21:25:02 +0000;
68d40c4 Added teh cqn package to the repository. by Chao-Jen Wong <cwon2@fhcrc.org> 2011-06-20 21:21:22 +0000;