Graph of corral
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• (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by 2023-10-24 11:23:12 -0400;
• (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by 2023-10-24 11:23:12 -0400;
• bump x.y.z version to odd y following creation of RELEASE_3_17 branch by 2023-04-25 11:18:58 -0400;
• (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by 2023-04-25 11:18:58 -0400;
• updated versioning by 2023-02-09 13:07:40 -0500;
• version bump by 2023-02-09 13:01:45 -0500;
• 1. Fixing the issue described here: https://bioconductor.org/checkResults/3.17/bioc-LATEST/corral/ resulting from deprecation of scater::multiplot; the fix is to replace with gridExtra::grid.arrange 2. Adding CITATION file for the corresponding paper 3. Adding mention of Freeman-Tukey chi-squared residuals to description by 2023-02-09 11:52:53 -0500;
• bump x.y.z version to odd y following creation of RELEASE_3_16 branch by 2022-11-01 11:22:18 -0400;
• (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by 2022-11-01 11:22:18 -0400;
• bump x.y.z version to odd y following creation of RELEASE_3_15 branch by 2022-04-26 16:06:10 +0000;
• (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by 2022-04-26 16:06:10 +0000;
• version bump by 2021-11-19 17:15:38 -0500;
• bug fix by 2021-11-19 17:14:45 -0500;
• add ... to params by 2021-11-14 09:36:23 -0500;
• version bump by 2021-11-12 17:36:00 -0500;
• rebuilding manual; bug fixes by 2021-11-11 17:52:38 -0500;
• version bump by 2021-11-09 17:55:25 -0500;
• Merge pull request <a href="#11">#11</a> from laurenhsu1/devel2 by 2021-11-09 17:51:32 -0500;
• add scaled variance to news by 2021-11-09 17:50:54 -0500;
• Merge pull request <a href="#10">#10</a> from laurenhsu1/devel2 by 2021-11-09 17:50:07 -0500;
• add scaled variance plotting function by 2021-11-09 17:49:22 -0500;
• Merge pull request <a href="#9">#9</a> from laurenhsu1/devel2 by 2021-11-08 08:04:42 -0500;
• Merge branch 'master' into devel2 by 2021-11-08 08:04:30 -0500;
• adding CA variations and biplots by 2021-11-08 07:46:33 -0500;
• bump x.y.z version to odd y following creation of RELEASE_3_14 branch by 2021-10-26 17:00:34 +0000;
• (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by 2021-10-26 17:00:34 +0000;
• versioning problems by 2021-07-27 14:52:08 -0400;
• Merge branch 'master' of https://github.com/laurenhsu1/corral by 2021-07-27 14:41:59 -0400;
• version bump by 2021-07-27 11:04:59 -0700;
• Merge pull request <a href="#8">#8</a> from laurenhsu1/devel by 2021-07-27 11:04:59 -0700;
• version bump by 2021-07-27 11:03:14 -0700;
• Merge pull request <a href="#7">#7</a> from laurenhsu1/devel by 2021-07-27 10:59:16 -0700;
• add rmarkdown to description, addressing: http://bioconductor.org/checkResults/devel/bioc-LATEST/corral/nebbiolo2-buildsrc.html http://bioconductor.org/checkResults/devel/bioc-LATEST/corral/merida1-buildsrc.html by 2021-07-27 10:57:21 -0700;
• bump x.y.z version to odd y following creation of RELEASE_3_13 branch by 2021-05-19 16:53:22 +0000;
• (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by 2021-05-19 16:53:22 +0000;
• bump x.y.z version to odd y following creation of RELEASE_3_12 branch by 2020-10-27 11:58:16 -0400;
• (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by 2020-10-27 11:58:16 -0400;
• version bump by 2020-10-26 13:25:15 -0400;
• Updates to docs by 2020-10-23 18:04:25 -0400;
• Merge pull request <a href="#6">#6</a> from aedin/master by 2020-10-21 14:13:48 -0400;
• Documentation Update by 2020-10-15 16:54:21 -0400;
• fixing the col.w/row.w bug by 2020-08-18 17:10:42 -0400;
• version bump by 2020-08-12 15:09:25 -0400;
• Merge pull request <a href="#4">#4</a> from laurenhsu1/RELEASE_3_6 by 2020-08-10 14:29:02 -0400;
• Merge pull request <a href="#3">#3</a> from laurenhsu1/master by 2020-08-10 14:25:53 -0400;
• update NAMESPACE and roxygen to fix NOTES/ERRORS in examples; remove scater dependency from examples by 2020-08-10 14:23:40 -0400;
• Merge branch 'master' of https://github.com/laurenhsu1/corral by 2020-08-07 18:47:37 -0400;
• . by 2020-08-07 18:47:34 -0400;
• convert T/F to True/False; fix ncomp checking; remove LaplacesDemon from suggests; by 2020-08-06 19:23:56 -0400;
• change default cell embeddings for storing in sce and for plotting by 2020-08-06 03:15:57 -0400;
• add RV coefficient functions; accept user-provided row weights and column weights; change default number of PCs from 10 to 30; add new mode for corralm - rw_contrib sets matrix contributions for computing shared row weights across matrices; by 2020-08-06 01:55:21 -0400;
• plot fn updates; now only requires the embedding to create a basic plot and accepts corral and corralm objects by 2020-07-29 04:13:16 -0400;
• version bump by 2020-06-12 13:26:47 -0400;
• Merge branch 'master' of https://github.com/laurenhsu1/corral by 2020-06-12 13:21:48 -0400;
• update with hellinger dist by 2020-06-12 13:21:41 -0400;
• change default "large palette" to polychrome; accept user defined palettes by 2020-06-04 21:49:29 -0400;
• version bump by 2020-06-01 19:18:03 -0400;
• notes in https://bioconductor.org/spb_reports/corral_buildreport_20200601184936.html by 2020-06-01 18:54:20 -0400;
• missing comma; fixing https://bioconductor.org/spb_reports/corral_buildreport_20200601180326.html by 2020-06-01 18:27:31 -0400;
• add colData for Method in vignette addressing http://staging.bioconductor.org:8000/job/12475/ by 2020-06-01 17:56:04 -0400;
• address corralm on single SCE issue when 'splitby' groups are not in blocks by 2020-05-28 17:44:40 -0400;
• fixing coldata field name based on MAE by 2020-05-21 00:05:20 -0400;
• version bump by 2020-05-20 14:48:06 -0400;
• . by 2020-05-20 14:47:35 -0400;
• version bump by 2020-05-20 14:40:17 -0400;
• uncomment out MAE implementation in alignment vignette by 2020-05-20 14:39:13 -0400;
• version bump by 2020-05-18 19:16:12 -0400;
• fixing quotes https://bioconductor.org/spb_reports/corral_buildreport_20200518163925.html by 2020-05-18 16:49:16 -0400;
• reverting back to older version in vignette until MAE implementation is out of devel by 2020-05-18 16:35:03 -0400;
• import; fixing bug in: http://bioconductor.org/spb_reports/corral_buildreport_20200518161639.html by 2020-05-18 16:20:48 -0400;
• update MAE implementation of data setup by 2020-05-18 16:12:06 -0400;
• version bump by 2020-05-18 13:56:06 -0400;
• add comment clarifying devel branch of MAE can be used to simplify code block by 2020-05-18 13:54:48 -0400;
• add more detail on the input/output structure into the vignettes by 2020-05-18 13:19:59 -0400;
• Merge branch 'master' of https://github.com/laurenhsu1/corral by 2020-05-18 13:11:03 -0400;
• add input/output diagrams by 2020-05-18 13:04:45 -0400;
• update to input checks by 2020-05-14 11:28:04 -0400;
• fixing bug in https://bioconductor.org/spb_reports/corral_buildreport_20200513152250.html by 2020-05-13 15:29:47 -0400;
• resize sticker by 2020-05-13 15:11:13 -0400;
• updating namespace vignette bug https://bioconductor.org/spb_reports/corral_buildreport_20200513145005.html by 2020-05-13 15:09:50 -0400;
• update description in response to https://bioconductor.org/spb_reports/corral_buildreport_20200513144019.html resize sticker by 2020-05-13 14:46:38 -0400;
• update based on review part 1 of changes for https://github.com/Bioconductor/Contributions/issues/1492#issuecomment-624363679 by 2020-05-13 14:38:26 -0400;
• upload sticker by 2020-05-12 19:32:52 -0400;
• updating s3 print roxygen by 2020-05-04 15:54:43 -0400;
• add methods to description by 2020-05-04 15:09:10 -0400;
• add methods is into roxygen; rename input for s3 print methods by 2020-05-04 14:34:10 -0400;
• line lengths of examples; rename vignettes. addressing notes and warning in https://bioconductor.org/spb_reports/corral_buildreport_20200504112016.html by 2020-05-04 14:23:20 -0400;
• fixing typo by 2020-05-04 10:53:15 -0400;
• Merge branch 'master' of https://github.com/laurenhsu1/corral by 2020-05-01 23:46:52 -0400;
• fixing examples addressing errors from: https://bioconductor.org/spb_reports/corral_buildreport_20200501204335.html by 2020-05-01 23:46:18 -0400;
• Update utils.R by 2020-05-01 23:17:16 -0400;
• addressing errors: fixing roxygen example; adding MAE import back to namespace in corralm https://bioconductor.org/spb_reports/corral_buildreport_20200501185700.html by 2020-05-01 20:25:11 -0400;
• Merge branch 'master' of https://github.com/laurenhsu1/corral by 2020-05-01 18:41:14 -0400;
• namespace + roxygen updates for importing from MAE and SE by 2020-05-01 18:40:46 -0400;
• Update README.md by 2020-05-01 18:26:50 -0400;
• Update README.md by 2020-05-01 18:26:31 -0400;
• version bump for namespace update by 2020-05-01 18:17:24 -0400;
• namespace update for MAE and SE importFrom by 2020-05-01 18:16:06 -0400;
• description spacing + print method updates by 2020-05-01 18:12:58 -0400;
• delete rproj by 2020-05-01 12:56:33 -0400;