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  • 0a3328b (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:23:12 -0400;
  • ff9dade (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:23:12 -0400;
  • 0b476c8 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:18:58 -0400;
  • 7bcf4ec (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:18:58 -0400;
  • d84acfa updated versioning by Lauren Hsu <lrnshoe@gmail.com> 2023-02-09 13:07:40 -0500;
  • 2c55e81 version bump by Lauren Hsu <lrnshoe@gmail.com> 2023-02-09 13:01:45 -0500;
  • 17e3e46 1. Fixing the issue described here: https://bioconductor.org/checkResults/3.17/bioc-LATEST/corral/ resulting from deprecation of scater::multiplot; the fix is to replace with gridExtra::grid.arrange 2. Adding CITATION file for the corresponding paper 3. Adding mention of Freeman-Tukey chi-squared residuals to description by Lauren Hsu <lrnshoe@gmail.com> 2023-02-09 11:52:53 -0500;
  • 0b1bc7b bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:22:18 -0400;
  • b74b37a (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:22:18 -0400;
  • cb0a8b5 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:06:10 +0000;
  • 9798002 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:06:10 +0000;
  • 7c31411 version bump by Lauren Hsu <lrnshoe@gmail.com> 2021-11-19 17:15:38 -0500;
  • ed09411 bug fix by Lauren Hsu <lrnshoe@gmail.com> 2021-11-19 17:14:45 -0500;
  • a8085ce add ... to params by Lauren Hsu <lrnshoe@gmail.com> 2021-11-14 09:36:23 -0500;
  • 97e8385 version bump by Lauren Hsu <lrnshoe@gmail.com> 2021-11-12 17:36:00 -0500;
  • f271c23 rebuilding manual; bug fixes by Lauren Hsu <lrnshoe@gmail.com> 2021-11-11 17:52:38 -0500;
  • 0232efc version bump by Lauren Hsu <lrnshoe@gmail.com> 2021-11-09 17:55:25 -0500;
  • 4232523 Merge pull request <a href="#11">#11</a> from laurenhsu1/devel2 by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2021-11-09 17:51:32 -0500;
  • 7206f5a add scaled variance to news by Lauren Hsu <lrnshoe@gmail.com> 2021-11-09 17:50:54 -0500;
  • a149674 Merge pull request <a href="#10">#10</a> from laurenhsu1/devel2 by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2021-11-09 17:50:07 -0500;
  • c7f7426 add scaled variance plotting function by Lauren Hsu <lrnshoe@gmail.com> 2021-11-09 17:49:22 -0500;
  • 05856ca Merge pull request <a href="#9">#9</a> from laurenhsu1/devel2 by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2021-11-08 08:04:42 -0500;
  • 20dffdd Merge branch 'master' into devel2 by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2021-11-08 08:04:30 -0500;
  • 9c180a5 adding CA variations and biplots by Lauren Hsu <lrnshoe@gmail.com> 2021-11-08 07:46:33 -0500;
  • ee9bb0f bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:00:34 +0000;
  • fcef936 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:00:34 +0000;
  • 292c393 versioning problems by laurenhsu1 <lrnshoe@gmail.com> 2021-07-27 14:52:08 -0400;
  • 265e781 Merge branch 'master' of https://github.com/laurenhsu1/corral by laurenhsu1 <lrnshoe@gmail.com> 2021-07-27 14:41:59 -0400;
  • 15b4707 version bump by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2021-07-27 11:04:59 -0700;
  • 8a7d2f1 Merge pull request <a href="#8">#8</a> from laurenhsu1/devel by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2021-07-27 11:04:59 -0700;
  • b71f581 version bump by Lauren Hsu <lrnshoe@gmail.com> 2021-07-27 11:03:14 -0700;
  • 3a1fd96 Merge pull request <a href="#7">#7</a> from laurenhsu1/devel by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2021-07-27 10:59:16 -0700;
  • 6fd1086 add rmarkdown to description, addressing: http://bioconductor.org/checkResults/devel/bioc-LATEST/corral/nebbiolo2-buildsrc.html http://bioconductor.org/checkResults/devel/bioc-LATEST/corral/merida1-buildsrc.html by Lauren Hsu <lrnshoe@gmail.com> 2021-07-27 10:57:21 -0700;
  • ee538f5 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:53:22 +0000;
  • 1c730af (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:53:22 +0000;
  • c5f437a bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:58:16 -0400;
  • 806b978 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:58:16 -0400;
  • a05ddcb version bump by laurenhsu1 <lrnshoe@gmail.com> 2020-10-26 13:25:15 -0400;
  • dd6c3e8 Updates to docs by laurenhsu1 <lrnshoe@gmail.com> 2020-10-23 18:04:25 -0400;
  • d10bd50 Merge pull request <a href="#6">#6</a> from aedin/master by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2020-10-21 14:13:48 -0400;
  • 660dcfa Documentation Update by Aedin Culhane <aedin@jimmy.harvard.edu> 2020-10-15 16:54:21 -0400;
  • 2ef81d4 fixing the col.w/row.w bug by laurenhsu1 <lrnshoe@gmail.com> 2020-08-18 17:10:42 -0400;
  • 4585dc6 version bump by laurenhsu1 <lrnshoe@gmail.com> 2020-08-12 15:09:25 -0400;
  • 2da99d9 Merge pull request <a href="#4">#4</a> from laurenhsu1/RELEASE_3_6 by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2020-08-10 14:29:02 -0400;
  • 9fe5eea Merge pull request <a href="#3">#3</a> from laurenhsu1/master by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2020-08-10 14:25:53 -0400;
  • 054fa73 update NAMESPACE and roxygen to fix NOTES/ERRORS in examples; remove scater dependency from examples by laurenhsu1 <lrnshoe@gmail.com> 2020-08-10 14:23:40 -0400;
  • cb0d16f Merge branch 'master' of https://github.com/laurenhsu1/corral by laurenhsu1 <lrnshoe@gmail.com> 2020-08-07 18:47:37 -0400;
  • 356ae14 . by laurenhsu1 <lrnshoe@gmail.com> 2020-08-07 18:47:34 -0400;
  • 5501a92 convert T/F to True/False; fix ncomp checking; remove LaplacesDemon from suggests; by laurenhsu1 <lrnshoe@gmail.com> 2020-08-06 19:23:56 -0400;
  • a30f6c0 change default cell embeddings for storing in sce and for plotting by laurenhsu1 <lrnshoe@gmail.com> 2020-08-06 03:15:57 -0400;
  • 18acd3e add RV coefficient functions; accept user-provided row weights and column weights; change default number of PCs from 10 to 30; add new mode for corralm - rw_contrib sets matrix contributions for computing shared row weights across matrices; by laurenhsu1 <lrnshoe@gmail.com> 2020-08-06 01:55:21 -0400;
  • ff0cd43 plot fn updates; now only requires the embedding to create a basic plot and accepts corral and corralm objects by laurenhsu1 <lrnshoe@gmail.com> 2020-07-29 04:13:16 -0400;
  • 5939584 version bump by laurenhsu1 <lrnshoe@gmail.com> 2020-06-12 13:26:47 -0400;
  • b8508b6 Merge branch 'master' of https://github.com/laurenhsu1/corral by laurenhsu1 <lrnshoe@gmail.com> 2020-06-12 13:21:48 -0400;
  • 03b6050 update with hellinger dist by laurenhsu1 <lrnshoe@gmail.com> 2020-06-12 13:21:41 -0400;
  • 9f3a8a4 change default "large palette" to polychrome; accept user defined palettes by Lauren <lhsu@locus.co> 2020-06-04 21:49:29 -0400;
  • c4a3682 version bump by laurenhsu1 <lrnshoe@gmail.com> 2020-06-01 19:18:03 -0400;
  • 96a3e30 notes in https://bioconductor.org/spb_reports/corral_buildreport_20200601184936.html by laurenhsu1 <lrnshoe@gmail.com> 2020-06-01 18:54:20 -0400;
  • 3be9d2e missing comma; fixing https://bioconductor.org/spb_reports/corral_buildreport_20200601180326.html by laurenhsu1 <lrnshoe@gmail.com> 2020-06-01 18:27:31 -0400;
  • 3b0c986 add colData for Method in vignette addressing http://staging.bioconductor.org:8000/job/12475/ by laurenhsu1 <lrnshoe@gmail.com> 2020-06-01 17:56:04 -0400;
  • 34a38a6 address corralm on single SCE issue when 'splitby' groups are not in blocks by laurenhsu1 <lrnshoe@gmail.com> 2020-05-28 17:44:40 -0400;
  • 4aa20c2 fixing coldata field name based on MAE by laurenhsu1 <lrnshoe@gmail.com> 2020-05-21 00:05:20 -0400;
  • 000746e version bump by laurenhsu1 <lrnshoe@gmail.com> 2020-05-20 14:48:06 -0400;
  • cf90b68 . by laurenhsu1 <lrnshoe@gmail.com> 2020-05-20 14:47:35 -0400;
  • 7cf011d version bump by laurenhsu1 <lrnshoe@gmail.com> 2020-05-20 14:40:17 -0400;
  • 929ba17 uncomment out MAE implementation in alignment vignette by laurenhsu1 <lrnshoe@gmail.com> 2020-05-20 14:39:13 -0400;
  • 4cb4e06 version bump by laurenhsu1 <lrnshoe@gmail.com> 2020-05-18 19:16:12 -0400;
  • 019b485 fixing quotes https://bioconductor.org/spb_reports/corral_buildreport_20200518163925.html by laurenhsu1 <lrnshoe@gmail.com> 2020-05-18 16:49:16 -0400;
  • 6b4e951 reverting back to older version in vignette until MAE implementation is out of devel by laurenhsu1 <lrnshoe@gmail.com> 2020-05-18 16:35:03 -0400;
  • 551e86b import; fixing bug in: http://bioconductor.org/spb_reports/corral_buildreport_20200518161639.html by laurenhsu1 <lrnshoe@gmail.com> 2020-05-18 16:20:48 -0400;
  • cb8813a update MAE implementation of data setup by laurenhsu1 <lrnshoe@gmail.com> 2020-05-18 16:12:06 -0400;
  • eec5f09 version bump by laurenhsu1 <lrnshoe@gmail.com> 2020-05-18 13:56:06 -0400;
  • c24a34f add comment clarifying devel branch of MAE can be used to simplify code block by laurenhsu1 <lrnshoe@gmail.com> 2020-05-18 13:54:48 -0400;
  • 63a60c8 add more detail on the input/output structure into the vignettes by laurenhsu1 <lrnshoe@gmail.com> 2020-05-18 13:19:59 -0400;
  • 117df66 Merge branch 'master' of https://github.com/laurenhsu1/corral by laurenhsu1 <lrnshoe@gmail.com> 2020-05-18 13:11:03 -0400;
  • 14c504a add input/output diagrams by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2020-05-18 13:04:45 -0400;
  • 3b2c071 update to input checks by laurenhsu1 <lrnshoe@gmail.com> 2020-05-14 11:28:04 -0400;
  • 18bb408 fixing bug in https://bioconductor.org/spb_reports/corral_buildreport_20200513152250.html by laurenhsu1 <lrnshoe@gmail.com> 2020-05-13 15:29:47 -0400;
  • a5d8c99 resize sticker by laurenhsu1 <lrnshoe@gmail.com> 2020-05-13 15:11:13 -0400;
  • 7b4291b updating namespace vignette bug https://bioconductor.org/spb_reports/corral_buildreport_20200513145005.html by laurenhsu1 <lrnshoe@gmail.com> 2020-05-13 15:09:50 -0400;
  • b640f26 update description in response to https://bioconductor.org/spb_reports/corral_buildreport_20200513144019.html resize sticker by laurenhsu1 <lrnshoe@gmail.com> 2020-05-13 14:46:38 -0400;
  • e5f4863 update based on review part 1 of changes for https://github.com/Bioconductor/Contributions/issues/1492#issuecomment-624363679 by laurenhsu1 <lrnshoe@gmail.com> 2020-05-13 14:38:26 -0400;
  • d8905af upload sticker by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2020-05-12 19:32:52 -0400;
  • 6a6f6fd updating s3 print roxygen by laurenhsu1 <lrnshoe@gmail.com> 2020-05-04 15:54:43 -0400;
  • e037be2 add methods to description by laurenhsu1 <lrnshoe@gmail.com> 2020-05-04 15:09:10 -0400;
  • a26ef90 add methods is into roxygen; rename input for s3 print methods by laurenhsu1 <lrnshoe@gmail.com> 2020-05-04 14:34:10 -0400;
  • 43dba94 line lengths of examples; rename vignettes. addressing notes and warning in https://bioconductor.org/spb_reports/corral_buildreport_20200504112016.html by laurenhsu1 <lrnshoe@gmail.com> 2020-05-04 14:23:20 -0400;
  • 130739a fixing typo by laurenhsu1 <lrnshoe@gmail.com> 2020-05-04 10:53:15 -0400;
  • 35801fb Merge branch 'master' of https://github.com/laurenhsu1/corral by laurenhsu1 <lrnshoe@gmail.com> 2020-05-01 23:46:52 -0400;
  • 4edb4ca fixing examples addressing errors from: https://bioconductor.org/spb_reports/corral_buildreport_20200501204335.html by laurenhsu1 <lrnshoe@gmail.com> 2020-05-01 23:46:18 -0400;
  • 48c9fe5 Update utils.R by Aedin Culhane <aedin@jimmy.harvard.edu> 2020-05-01 23:17:16 -0400;
  • 0352171 addressing errors: fixing roxygen example; adding MAE import back to namespace in corralm https://bioconductor.org/spb_reports/corral_buildreport_20200501185700.html by laurenhsu1 <lrnshoe@gmail.com> 2020-05-01 20:25:11 -0400;
  • 8e0c4d1 Merge branch 'master' of https://github.com/laurenhsu1/corral by laurenhsu1 <lrnshoe@gmail.com> 2020-05-01 18:41:14 -0400;
  • 1d6bb98 namespace + roxygen updates for importing from MAE and SE by laurenhsu1 <lrnshoe@gmail.com> 2020-05-01 18:40:46 -0400;
  • 8763cbd Update README.md by Aedin Culhane <aedin@jimmy.harvard.edu> 2020-05-01 18:26:50 -0400;
  • f7905f7 Update README.md by Aedin Culhane <aedin@jimmy.harvard.edu> 2020-05-01 18:26:31 -0400;
  • c7830e7 version bump for namespace update by laurenhsu1 <lrnshoe@gmail.com> 2020-05-01 18:17:24 -0400;
  • b21caec namespace update for MAE and SE importFrom by laurenhsu1 <lrnshoe@gmail.com> 2020-05-01 18:16:06 -0400;
  • a7b8a18 description spacing + print method updates by laurenhsu1 <lrnshoe@gmail.com> 2020-05-01 18:12:58 -0400;
  • a837a3f delete rproj by Lauren Hsu <50427381+laurenhsu1@users.noreply.github.com> 2020-05-01 12:56:33 -0400;