Package: consensusDE
Type: Package
Title: RNA-seq analysis using multiple algorithms
Version: 1.25.0
Authors@R: c(person("Ashley J.", "Waardenberg", email = "a.waardenberg@gmail.com", 
    role = c("aut", "cre")), person("Martha M.", "Cooper", email = "marthacooper92@gmail.com", 
    role = c("ctb")))
Description: This package allows users to perform DE analysis using multiple 
    algorithms. It seeks consensus from multiple methods. Currently it supports 
    "Voom", "EdgeR" and "DESeq". It uses RUV-seq (optional) to remove unwanted 
    sources of variation.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Suggests: 
    knitr,
    rmarkdown
VignetteBuilder: knitr
biocViews: 
    Transcriptomics,
    MultipleComparison,
    Clustering,
    Sequencing,
    Software
Depends: 
    R (>= 3.5),
    BiocGenerics
Imports:
    airway,
    AnnotationDbi,
    BiocParallel,
    Biobase,
    Biostrings,
    data.table,
    dendextend,
    DESeq2 (>= 1.20.0),
    EDASeq,
    ensembldb,
    edgeR,
    EnsDb.Hsapiens.v86,
    GenomicAlignments,
    GenomicFeatures,
    limma,
    org.Hs.eg.db,
    pcaMethods,
    RColorBrewer,
    Rsamtools,
    RUVSeq,
    S4Vectors,
    stats,
    SummarizedExperiment,
    TxDb.Dmelanogaster.UCSC.dm3.ensGene,
    utils