Name Mode Size
..
AllGenerics.R 100644 3 kb
condiments-package.R 100644 0 kb
data.R 100644 1 kb
differentiationTest.R 100755 1 kb
fateSelectionTest.R 100755 12 kb
imbalance_score.R 100755 5 kb
multiple_samples.R 100755 14 kb
nLineages.R 100644 2 kb
progressionTest.R 100755 16 kb
slingshot_conditions.R 100644 7 kb
topologyTest.R 100755 18 kb
toy.R 100644 3 kb
utils.R 100644 6 kb
README.md
<!-- badges: start --> [![R-CMD-check](https://github.com/HectorRDB/condiments/workflows/R-CMD-check/badge.svg?branch=master)](https://github.com/HectorRDB/condiments/actions) [![Codecov test coverage](https://codecov.io/gh/HectorRDB/condiments/branch/master/graph/badge.svg)](https://codecov.io/gh/HectorRDB/condiments?branch=master) [![Generic badge](https://img.shields.io/static/v1?label=DOI&message=10.1101/2021.03.09.433671&color=brightgreen)](https://doi.org/10.1101/2021.03.09.433671) <!-- badges: end --> <img src='man/figures/logo.png' align="right" height="138.5"/> # R package: condiments ## Installation You can install the `condiments` from [bioconductor](https://bioconductor.org/packages/release/bioc/html/condiments.html) using ```r if(!requireNamespace("BiocManager", quietly = TRUE)) { install.packages("BiocManager") } BiocManager::install("condiments") ``` To install the development version in `R`, run: ```r if(!requireNamespace("devtools", quietly = TRUE)) { install.packages("devtools") } devtools::install_github("HectorRDB/condiments") ``` The installation should only take a few seconds. The dependencies of the package are listed in the DESCRIPTION file of the package. ## Issues and bug reports Please use https://github.com/HectorRDB/condiments/issues to submit issues, bug reports, and comments. ## Usage Start with the vignette [online](https://hectorrdb.github.io/condiments/articles/condiments.html) or explore on of our case studies in the paper [here](https://hectorrdb.github.io/condimentsPaper).