Bioconductor Code: compEpiTools

Graph of compEpiTools

3664bd5 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:00:44 -0400;
a66a836 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:00:44 -0400;
4f44f42 (origin/RELEASE_3_17, RELEASE_3_17) Version bump by mfurla <mattia.furlan776@edu.unito.it> 2023-05-02 21:23:53 +0200;
51d9914 Fixed conflicts in maintainer change by mfurla <mattia.furlan776@edu.unito.it> 2023-05-02 21:10:40 +0200;
ae8ba19 bug fix: version bump by mfurla <mattia.furlan776@edu.unito.it> 2023-05-02 21:10:40 +0200;
5658a82 bug fix: correct date by mfurla <mattia.furlan776@edu.unito.it> 2023-05-02 21:09:48 +0200;
68a7645 Merge branch 'devel' of git.bioconductor.org:packages/compEpiTools into devel by mfurla <mattia.furlan776@edu.unito.it> 2023-05-01 10:30:35 +0200;
3dae3b9 New maintainer. by mfurla <mattia.furlan776@edu.unito.it> 2023-05-01 10:29:31 +0200;
5c0573d bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:33:58 -0400;
e252bdf bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:33:58 -0400;
754bc45 New maintainer. by mfurla <mattia.furlan776@edu.unito.it> 2023-04-24 20:56:30 +0200;
ed843d5 New maintainer. by mfurla <mattia.furlan776@edu.unito.it> 2023-04-21 21:53:02 +0200;
5de0197 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:09 -0400;
a41173d (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:09 -0400;
d70b6bf remove deprecation message by lshep <lori.shepherd@roswellpark.org> 2022-10-18 11:40:50 -0400;
7487087 applyparamsettings by Kamal Kishore <kishor01@c02fx59jmd6r.broadband> 2022-10-18 10:55:53 +0100;
dfb90eb bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:21:05 +0000;
4a6dc81 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:21:05 +0000;
2ef1e61 DESCRIPTION by Kamal Kishore <kishor01@c02fx59jmd6r.broadband> 2022-03-18 15:33:42 +0000;
78a4af1 getPromoterClass by Kamal Kishore <kishor01@c02fx59jmd6r.broadband> 2022-03-18 15:32:47 +0000;
738a982 updated_description by Kamal Kishore <kishor01@c02fx59jmd6r.broadband> 2022-03-15 18:18:05 +0000;
863ea87 clusterapply by Kamal Kishore <kishor01@c02fx59jmd6r.cri.camres.org> 2022-03-14 13:24:46 +0000;
20988a4 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-20 23:28:21 -0500;
b4c80a3 Deprecation by lshep <lori.shepherd@roswellpark.org> 2021-11-15 13:32:58 -0500;
9e89953 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:15:25 +0000;
7f99015 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:15:25 +0000;
b448046 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:06:54 +0000;
cefdb04 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:06:54 +0000;
73ba5d3 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:58:18 -0400;
9acaf26 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:58:18 -0400;
373593d bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:42:26 +0000;
8ee6d18 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:42:26 +0000;
c014b5e heatmapPlot vignette error by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2020-03-11 16:33:58 +0000;
2ca101f bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:37:57 -0400;
10eba89 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:03 -0400;
03057ea bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:42 -0400;
d0225fd (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:49 -0400;
cea5222 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:33 -0400;
bfc46e8 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:54 -0400;
01cb89a updated matchEnhancers by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-07-19 20:59:46 +0100;
0b68ad8 commented heatmapPlot man page by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-07-19 16:26:09 +0100;
fd3ab8a getPromoterClass bug by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-07-11 12:16:17 +0100;
be8400d DESCRIPTION by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-22 14:05:15 +0100;
c92a08b toGOres by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-22 14:03:50 +0100;
ac8f61c Merge pull request <a href="#1">#1</a> from kamalfartiyal84/RELEASE_3_7 by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-22 12:31:48 +0100;
3ce996a topGOres by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-22 12:30:46 +0100;
d9d95f0 (origin/RELEASE_3_7, RELEASE_3_7) topGOres by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-22 12:28:58 +0100;
eb6247d topGOres by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-22 12:11:33 +0100;
93a0ac2 GRbaseCoverage by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-17 23:01:07 +0100;
4299607 GRbaseCoverage by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-17 22:54:14 +0100;
a3b26f2 updated description by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-16 15:52:02 +0100;
35b45ff Merge pull request <a href="#1">#1</a> from kamalfartiyal84/master by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-16 15:49:57 +0100;
a669c79 updated GRbaseCoverage by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-16 15:03:34 +0100;
6df7547 updated heatmapPlot by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-16 14:59:59 +0100;
87a5d89 updated heatmapplot and topGOres by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-11 22:59:54 +0100;
faffab1 updated heatmapplot and topGOres by kamalfartiyal84 <kamal.fartiyal84@gmail.com> 2018-05-11 22:59:23 +0100;
f05f96a bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:40 -0400;
950b565 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:33 -0400;
9f1a1b8 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:53:37 -0400;
af9edf3 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:23 -0400;
0bce75d Simplify calls to findOverlaps() by not explicitly setting optional arguments to their default values. by Hervé Pagès <hpages@fredhutch.org> 2017-09-18 09:57:56 -0700;
bbc122f bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
944c62a (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
8d30c7f bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
1363f88 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
e438d58 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
445f1e0 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
37ed005 Updated GRcoverageInBins by Kamal Kishore <kamal.fartiyal84@gmail.com> 2016-10-17 11:53:22 +0000;
bc21b11 Updated GRcoverageInbins bug by Kamal Kishore <kamal.fartiyal84@gmail.com> 2016-10-17 10:24:45 +0000;
dd3b3cf Updated the bug in topGOres that was returning very low p-values as characters instead of numeric by Kamal Kishore <kamal.fartiyal84@gmail.com> 2016-10-06 15:35:33 +0000;
246f90b (origin/RELEASE_3_3, RELEASE_3_3) Updated topGOres for p-value bug by Kamal Kishore <kamal.fartiyal84@gmail.com> 2016-08-24 16:16:04 +0000;
1c1e5b2 updated namespace by Kamal Kishore <kamal.fartiyal84@gmail.com> 2016-05-25 16:04:23 +0000;
2dcb56e Updated description and namespace with ggplots2 by Kamal Kishore <kamal.fartiyal84@gmail.com> 2016-05-25 15:28:19 +0000;
fd59078 Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
45e25c4 Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
06af440 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
b1cef6b Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
28c5854 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
a2b43c5 Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
7b53625 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
47f7ef3 Updated author information by Kamal Kishore <kamal.fartiyal84@gmail.com> 2016-03-23 16:49:26 +0000;
dffb5a4 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
a812c0f (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
078104c Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
a88b88f Added citation by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-09-29 09:50:05 +0000;
c652b49 (origin/RELEASE_3_1, RELEASE_3_1) added citation by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-09-29 09:48:14 +0000;
016b6dd Updated GR2fasta function by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-06-10 09:38:18 +0000;
35c45b5 Updated GR2fasta function by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-06-10 09:37:44 +0000;
1938309 Updated GRannotate for EG2GS related update from development version by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-06-08 12:28:29 +0000;
4121c67 Updated vignette by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-06-08 12:26:06 +0000;
9763420 Updated error in GRannotate related to EG2GS argument by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-06-08 12:20:08 +0000;
948153e GRangesInPromoters by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-05-21 16:16:58 +0000;
e9142f9 GRangesInPromoters by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-05-21 16:03:00 +0000;
156e675 Updated transcripts retrieval in all functions by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-05-21 14:49:05 +0000;
37aa3da Updated transcripts retrieval in all functions by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-05-21 14:47:25 +0000;
ec2fa8f Updated GRcoverageSummit by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-04-29 13:59:30 +0000;
32cb895 Updated NEWS by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-04-28 09:16:43 +0000;
c27a3e2 Updated GRcoverageSummit by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-04-28 09:14:51 +0000;
180d024 Updated development package same as latest release one by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-04-27 13:46:40 +0000;
ec04109 fixed stallingindex example by Kamal Kishore <kamal.fartiyal84@gmail.com> 2015-04-27 09:34:41 +0000;