Graph of coMethDMR
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  • b5ea1bb (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:38:47 -0400;
  • aa83334 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:38:47 -0400;
  • 322cc9e bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:35:11 -0400;
  • 40e80ff (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:35:11 -0400;
  • 6d46f0e bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:26:14 -0400;
  • 366ee96 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:26:14 -0400;
  • c04e6ec bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:20:23 +0000;
  • 1f363f7 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:20:23 +0000;
  • 899b5c0 Merge branch 'master' of https://github.com/TransBioInfoLab/coMethDMR by Fernanda Veitzman <fveit001@fiu.edu> 2022-04-04 19:45:31 -0400;
  • 01514bf Merge branch 'update_sesame' by Tiago Chedraoui Silva <tiagochst@gmail.com> 2022-04-04 19:35:03 -0400;
  • ce65d84 Increment to version 0.99.17 by Fernanda Veitzman <fveit001@fiu.edu> 2022-04-04 18:29:42 -0400;
  • 4622392 `localHub = TRUE` not working on my side by Tiago Chedraoui Silva <tiagochst@gmail.com> 2022-04-04 15:02:00 -0400;
  • 3cf16e1 Importing utis <a href="#21">#21</a> by Tiago Chedraoui Silva <tiagochst@gmail.com> 2022-04-04 14:55:05 -0400;
  • eb8436b Bug fix by Tiago Chedraoui Silva <tiagochst@gmail.com> 2022-03-30 11:50:38 -0400;
  • 0c06d01 Merge pull request <a href="#20">#20</a> from TransBioInfoLab/update_sesame by Tiago Chedraoui Silva <tiagochst@gmail.com> 2022-03-30 11:49:11 -0400;
  • cf88927 Fixing function to take into account that we might have data with the same name from different dates, plus that the query filtering is not perfect by Tiago Chedraoui Silva <tiagochst@gmail.com> 2022-03-30 11:44:20 -0400;
  • b3bc8c0 I think this is all we need for Issue #14; more edits per Issue <a href="#18">#18</a> and Issue <a href="#19">#19</a> by gabrielodom <gabriel.odom@fiu.edu> 2022-03-29 19:38:47 -0400;
  • 77522f6 Making progress on Issue #14; also related to Issue <a href="#18">#18</a> and Issue <a href="#19">#19</a> by gabrielodom <gabriel.odom@fiu.edu> 2022-03-29 17:07:39 -0400;
  • 02e5644 Check time dropped 30% (about 23 minutes to about 15 minutes), so these changes are helping. Changes per Issue #14; also see Issue <a href="#19">#19</a> by gabrielodom <gabriel.odom@fiu.edu> 2022-03-29 15:55:56 -0400;
  • f6a2a8f See Issue #14, Issue #18, Issue <a href="#19">#19</a> by gabrielodom <gabriel.odom@fiu.edu> 2022-03-29 14:44:28 -0400;
  • ad1f46b Code cleaning; see Issue <a href="#19">#19</a> by gabrielodom <gabriel.odom@fiu.edu> 2022-03-29 09:57:57 -0400;
  • 3ad47e9 First pass at removing direct dependency on sesameData:: by gabrielodom <gabriel.odom@fiu.edu> 2022-03-28 19:31:37 -0400;
  • 5f5cc3d Updating Travis to bioc-devel by gabrielodom <gabriel.odom@fiu.edu> 2022-03-28 19:28:36 -0400;
  • f2dfb95 Updating Illumina EPIC annotation version. Closes #14. by gabrielodom <gabriel.odom@fiu.edu> 2022-02-22 16:36:36 -0500;
  • ed5d18d bug fix notes per Issue <a href="#7">#7</a> by Gabriel J. Odom <gabriel.odom@fiu.edu> 2022-01-28 14:18:01 -0500;
  • 89588ff Sanity checking for values. Closes <a href="#11">#11</a> by gabrielodom <gabriel.odom@fiu.edu> 2022-01-26 16:05:23 -0500;
  • 183daac Closes Issue #13. Related to Issue #9, Issue #10, and Issue <a href="#12">#12</a> by gabrielodom <gabriel.odom@fiu.edu> 2022-01-24 19:11:20 -0500;
  • 30b3b5d We currently have an error on line 134 of vignette 2 in windows. I'm going to check if this error also occurs on Mac by gabrielodom <gabriel.odom@fiu.edu> 2022-01-24 17:33:54 -0500;
  • 6546bc3 Merge pull request <a href="#10">#10</a> from Ning-L/master by Gabriel J. Odom <gabriel.odom@fiu.edu> 2022-01-24 17:07:17 -0500;
  • 1c9b9d2 Include "Stat" column when lmer failed by Lijiao Ning <lijiao.ning@cnrs.fr> 2022-01-20 11:02:17 +0100;
  • 06bc95e Merge branch 'TransBioInfoLab:master' into master by Lijiao Ning <lijiao.ning91@gmail.com> 2022-01-03 17:34:25 +0100;
  • c13b374 ignore strand while sorting by Lijiao Ning <lijiao.ning@cnrs.fr> 2022-01-03 17:32:58 +0100;
  • 6b53a4f ignore strand while sorting by Lijiao Ning <lijiao.ning@cnrs.fr> 2022-01-03 17:30:21 +0100;
  • a93b1da ignore strand while sorting by Lijiao Ning <lijiao.ning@cnrs.fr> 2022-01-03 17:26:33 +0100;
  • 04eec91 Added more install help to the README by Gabriel J. Odom <gabriel.odom@fiu.edu> 2022-01-03 11:23:12 -0500;
  • c0e5857 ignore strand while sorting by Lijiao Ning <lijiao.ning@cnrs.fr> 2022-01-03 17:06:31 +0100;
  • 19d4566 ignore strand while sorting by Lijiao Ning <lijiao.ning@cnrs.fr> 2022-01-03 16:58:36 +0100;
  • cc98eb7 update innstallaltion info by lxw391 <lily.wangg@gmail.com> 2022-01-03 10:54:33 -0500;
  • 3e49bc0 add BioC by lxw391 <lily.wangg@gmail.com> 2021-12-25 12:21:05 -0500;
  • 34553b9 Update GetResiduals.R by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-12-10 11:15:46 -0500;
  • 58e9893 Update README.md by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-12-10 11:14:38 -0500;
  • ba744d0 Update README.md by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-11-19 12:06:06 -0500;
  • 4d86af9 Update README.md by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-11-19 12:03:47 -0500;
  • 5762fdd Removed hidden code flag in vignette. The knit version of the vignette would not run because readers could not see invisible code. Tiago will check into this more, but we have a fix for now by gabrielodom <gabriel.odom@fiu.edu> 2021-11-12 11:03:27 -0500;
  • 1edd855 Remove keyword by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-10-22 18:45:26 -0400;
  • ab2efa4 Update README.md by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-10-22 14:28:04 -0400;
  • 28f509d We were checking for HM450 for both 450k and EPIC by mistake. Also, we are trying to remove any dependence on dplyr to clean up the rat's nest that is our NAMESPACE by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-10-22 13:31:21 -0400;
  • df2fefb Fixing namespace by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-10-21 18:02:06 -0400;
  • 8436217 Using most update sesame version by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-10-21 17:54:07 -0400;
  • 64f54b8 Incremented version to 0.99.10 by Fernanda Veitzman <fveit001@fiu.edu> 2021-10-21 16:40:34 -0400;
  • 348f049 Added buildignore files to ignore .travis.yml during build for all collaborators by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-10-21 14:57:22 -0400;
  • 548f6de Renaming rds by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-10-21 14:04:42 -0400;
  • ec87693 Another attempt to fix the sesameData dependency per Issue <a href="#1">#1</a> by gabrielodom <gabriel.odom@fiu.edu> 2021-10-21 13:22:34 -0400;
  • e278bc9 Modifying function to one not hidden by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-10-21 12:47:30 -0400;
  • 3e1e22c undo test by Fernanda Veitzman <fveit001@fiu.edu> 2021-10-21 10:30:43 -0400;
  • cf44fa8 test commit by Fernanda Veitzman <fveit001@fiu.edu> 2021-10-21 10:30:16 -0400;
  • 49a9e0e Per Issue #1, we added example code to connect our downstream analysis to upstream pre-processing via minfi or RnBeads by gabrielodom <gabriel.odom@fiu.edu> 2021-10-21 10:15:49 -0400;
  • d0af9ad Added support for GRanges-class objects per Issue <a href="#1">#1</a> by gabrielodom <gabriel.odom@fiu.edu> 2021-10-20 16:06:03 -0400;
  • 09d1aef removing tentative support for HM27: this array is far too sparse for our subregion clustering method to be effective by gabrielodom <gabriel.odom@fiu.edu> 2021-10-15 17:55:38 -0400;
  • 3023710 Per Issue #1, cleaning up lots of code and documentation by gabrielodom <gabriel.odom@fiu.edu> 2021-10-15 17:50:24 -0400;
  • 037fd9c Bug fix by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-10-15 14:42:32 -0400;
  • fc8a620 Bug fix by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-10-15 14:31:08 -0400;
  • 0763d7b Adding support to 27k in function OrderCpGsByLocation by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-10-15 14:27:00 -0400;
  • 824b7da Working on Issue #1. One of the comments was that our code has commented-out code, which is in poor style. I'm going through and cleaning up the coding and documentation now. by gabrielodom <gabriel.odom@fiu.edu> 2021-10-15 14:08:37 -0400;
  • 648376a .RDS preplaced to .rds by Fernanda Veitzman <fveit001@fiu.edu> 2021-10-13 10:44:52 -0400;
  • 4df4b85 Per Issue #1, trying to find+fix errors by gabrielodom <gabriel.odom@fiu.edu> 2021-10-13 10:35:44 -0400;
  • 3584c0f Per Issue <a href="#7">#7</a> and for the Bioconductor submission, we are making edits to the CreateRdrop() function and fixing the case for one of the data file extensions. by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-10-08 21:06:49 -0400;
  • a5ebb39 update readme file by lxw391 <lily.wangg@gmail.com> 2021-09-25 14:18:26 -0400;
  • 507e5d3 Updated vignetes to check code; we still see a bplapply error at random (we can't reproduce it and it rarely appears). Added sesameData to Depends:. Concerns Issue <a href="#1">#1</a> by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-08-27 12:36:35 -0400;
  • 76736cb Moving calls to sesameData:: functions to .onLoad(). Made other miscellaneous edits per Issue #1. by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-06-08 19:03:40 -0400;
  • fdda3e8 Updated Description, Vignettes 1 and 2. by Fernanda Veitzman <fveit001@fiu.edu> 2021-06-08 17:46:58 -0400;
  • 57d697a Removing comments from travis by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-06-04 16:03:20 -0400;
  • 7dc05da Update travis by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-06-04 14:29:22 -0400;
  • bdcdbaf small changes to travis by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-06-04 14:27:46 -0400;
  • 73259dc Updating travis by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-06-04 13:50:56 -0400;
  • 707ff83 Add travis CI config by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-06-04 12:03:09 -0400;
  • cb42e22 Adding cache download before data access by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-06-04 11:43:54 -0400;
  • aa0c6ac Per Issue #1, updated data documentation to still work after LazyData was set to "false" by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-05-12 13:20:15 -0400;
  • 26ee24f Fixing redudant paste, see issue <a href="#1">#1</a> by Fernanda Veitzman <fveit001@fiu.edu> 2021-05-12 13:05:41 -0400;
  • ae98b93 Version bump by Fernanda Veitzman <fveit001@fiu.edu> 2021-05-06 12:06:29 -0400;
  • 5341e86 Version bump by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-05-05 18:30:05 -0400;
  • 3561e4e ident code by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-05-05 11:05:03 -0400;
  • 075192e Stripping out all unnecessary data sets. We've moved them to coMethDMR_data. Closes Issue <a href="#5">#5</a> by gabrielodom <gabriel.odom@fiu.edu> 2021-05-04 22:26:54 -0400;
  • b3cf28f Working on documenting the supplemental data sets per Issue <a href="#5">#5</a> by gabrielodom <gabriel.odom@fiu.edu> 2021-05-04 21:39:38 -0400;
  • 8d91ad9 Updating function per Issue #4, and we're also trying to reduce unnecessary calls to data in inst/extdata per Issue <a href="#5">#5</a> by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-05-04 20:05:43 -0400;
  • 071bf07 Per Issue #2, reduced computing time in tests and function examples by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-04-30 19:36:48 -0400;
  • 9ed5d57 Reducing time, by removing tests that loads data and are not a main function of the package by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-04-30 15:19:34 -0400;
  • 6e335a0 Updating time comments in vignette 2 by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-04-30 14:37:24 -0400;
  • cbe7691 <a href="#2">#2</a> Reducing some time by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-04-30 14:35:20 -0400;
  • 58a88ef Reducing example by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-04-30 14:25:46 -0400;
  • 8b13e74 <a href="#2">#2</a> reduce OrderCpGsByLocation example by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-04-30 14:22:06 -0400;
  • 5d2df3e <a href="#2">#2</a> Reducing NameRegion example by Tiago Chedraoui Silva <tiagochst@gmail.com> 2021-04-30 14:19:08 -0400;
  • 2139ff0 Per Issue #2, I'm trying to tighten up the vignettes so the package checks in a reasonable time. by gabrielodom <gabriel.odom@fiu.edu> 2021-04-29 19:06:27 -0400;
  • 22ae6fa Working on issue #6, rerun on a second computer by Fernanda Veitzman <fveit001@fiu.edu> 2021-04-28 15:11:56 -0400;
  • 2d1bce5 working through Issue <a href="#6">#6</a> by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-04-28 11:40:21 -0400;
  • 96445bf Troubleshooting Issue <a href="#6">#6</a> by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-04-28 09:11:24 -0400;
  • 15c6754 Test commit updated news. by Fernanda Veitzman <fveit001@fiu.edu> 2021-04-21 14:58:33 -0400;
  • 9837a23 Migrated data. Checked for CRAN and BioC builds. NOTEs only for both. by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-04-21 12:49:31 -0400;
  • 747478e migrated code and documentation by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-04-21 11:57:59 -0400;
  • 1716c61 Update README.md by Gabriel J. Odom <gabriel.odom@fiu.edu> 2021-04-21 11:54:43 -0400;