# Generated by roxygen2: do not edit by hand

export(AnnotateResults)
export(CloseBySingleRegion)
export(CoMethAllRegions)
export(CoMethSingleRegion)
export(CpGsInfoAllRegions)
export(CpGsInfoOneRegion)
export(CreateOutputDF)
export(CreateParallelWorkers)
export(CreateRdrop)
export(FindComethylatedRegions)
export(GetCpGsInRegion)
export(GetResiduals)
export(ImportSesameData)
export(MarkComethylatedCpGs)
export(MarkMissing)
export(NameRegion)
export(OrderCpGsByLocation)
export(RegionsToRanges)
export(SplitCpGDFbyRegion)
export(WriteCloseByAllRegions)
export(lmmTest)
export(lmmTestAllRegions)
importFrom(AnnotationHub,query)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,SnowParam)
importFrom(BiocParallel,bplapply)
importFrom(ExperimentHub,ExperimentHub)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,sort.GenomicRanges)
importFrom(IRanges,IRanges)
importFrom(IRanges,subsetByOverlaps)
importFrom(bumphunter,clusterMaker)
importFrom(bumphunter,getSegments)
importFrom(lmerTest,lmer)
importFrom(methods,is)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,lm)
importFrom(stats,na.exclude)
importFrom(stats,p.adjust)
importFrom(stats,pnorm)
importFrom(stats,reshape)
importFrom(stats,residuals)
importFrom(utils,globalVariables)
importFrom(utils,tail)
importFrom(utils,write.csv)