Introduction ============ "cliqueMS" annotates processed LC/MZ data. This R package obtains annotation for isotopes, ion adducts and fragmentation adducts. The adducts list can be supplied by the user or either use one of the package's lists. Installation ============ Installation has been tested on Linux, Windows and macOS. You can install it the "release" version from Bioconductor with: ``` r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("cliqueMS", version = "3.10") ``` To install the "devel" version just change the `version` parameter to 3.11. Alternatively, you can install "cliqueMS" "devel" version from github with: ``` r # install.packages("devtools") devtools::install_github("osenan/cliqueMS") ``` Usage and examples ================== For a tutorial on "cliqueMS" please check the vignette: ``` r browseVignettes("cliqueMS") ```