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  • d52d2e6 (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:07:47 -0400;
  • 71cba9f (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:07:47 -0400;
  • d326ac8 (origin/RELEASE_3_15, RELEASE_3_15) version bump in release by cavei <paolo.cavei@gmail.com> 2022-09-21 08:36:59 +0200;
  • f191068 bug fix: solve as dgCMatrix deprecation by Matrix 1.5 by cavei <paolo.cavei@gmail.com> 2022-09-21 08:33:22 +0200;
  • a23a347 version bump in devel by cavei <paolo.cavei@gmail.com> 2022-09-21 08:34:30 +0200;
  • 87ca9c0 bug fix: solve as dgCMatrix deprecation by Matrix 1.5 by cavei <paolo.cavei@gmail.com> 2022-09-21 08:33:22 +0200;
  • afd92fe bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:13:22 +0000;
  • c739cc1 bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:13:22 +0000;
  • 5c2f89e bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:06:27 +0000;
  • 02cc60b (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:06:27 +0000;
  • 2b5f6b6 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:57:18 +0000;
  • 2faaf4e (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:57:18 +0000;
  • a71eeb2 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:48:58 -0400;
  • 3a1d234 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:48:58 -0400;
  • f18d5b5 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:32:50 +0000;
  • 4179105 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:32:50 +0000;
  • e2f3341 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:36:30 -0400;
  • ae4ab82 (origin/RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:36 -0400;
  • 03000f2 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:20 -0400;
  • d689548 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:40 -0400;
  • 6d677a2 Change seed in tests by Paolo Martini <paolo.cave@gmail.com> 2019-04-09 14:29:37 +0200;
  • c41049a bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:31 -0400;
  • e798b1c (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:50 -0400;
  • ef0a6fe (origin/RELEASE_3_7, RELEASE_3_7) Plot function uses RCy3 by Paolo Martini <paolo.cave@gmail.com> 2018-05-02 15:56:36 +0200;
  • 0e58ace Examples fixed by Paolo Martini <paolo.cave@gmail.com> 2018-05-02 15:55:43 +0200;
  • 8b6a145 Plot function uses RCy3 by Paolo Martini <paolo.cave@gmail.com> 2018-05-02 15:56:36 +0200;
  • eab12ba Examples fixed by Paolo Martini <paolo.cave@gmail.com> 2018-05-02 15:55:43 +0200;
  • 1baef61 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:39 -0400;
  • a43c30d bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:29 -0400;
  • 45d6898 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:40 -0400;
  • 34fe463 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:59 -0400;
  • 6c17706 Changes in clipper to be compliant with graphite. by Paolo Martini <paolo.cave@gmail.com> 2017-10-20 18:49:50 +0200;
  • 9391ddf bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 8cf42f9 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • c1af4c1 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 7430003 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 8dd2702 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 49d3663 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • dde3732 Fixes for RCytoscape and Mac-Win support. by Paolo Martini <paolo.cavei@gmail.com> 2016-10-04 09:27:41 +0000;
  • 9f00e04 mark as unsupported on non-linux like RCytoscape which clipper depends on by Herve Pages <hpages@fhcrc.org> 2016-09-11 21:22:53 +0000;
  • 20d160c bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • fe29fc6 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 79a03d5 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • ef3bec3 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 3158632 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 4257adc Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 769d6f5 (origin/RELEASE_3_1, RELEASE_3_1) merged r107983 from trunk by Paolo Martini <paolo.cavei@gmail.com> 2015-09-01 10:29:56 +0000;
  • 9a23918 Definition of moralize function. by Paolo Martini <paolo.cavei@gmail.com> 2015-09-01 10:03:59 +0000;
  • 720d3a0 merged r105931 from trunk by Paolo Martini <paolo.cavei@gmail.com> 2015-07-09 11:13:01 +0000;
  • 3d10914 Fixed compatibility issues with igraph. by Paolo Martini <paolo.cavei@gmail.com> 2015-07-09 11:00:54 +0000;
  • 9e15ae8 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 8f81bf7 Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 60b040e Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 8aabc15 biocView update by Sonali Arora <sarora@fhcrc.org> 2015-02-27 23:40:42 +0000;
  • 3c8332d (origin/RELEASE_3_0) Added back package name. by Paolo Martini <paolo.cavei@gmail.com> 2014-12-02 15:35:04 +0000;
  • eab15f9 Bug fix, .erged form r96960 from trunk by Paolo Martini <paolo.cavei@gmail.com> 2014-11-20 15:17:14 +0000;
  • ca3314f Bug fix for alwaysShrink parameter in clipperAllRoots function. by Paolo Martini <paolo.cavei@gmail.com> 2014-11-20 14:50:41 +0000;
  • 9a46905 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 2f94b3a Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • 94ccb6c Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • a1c0c83 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • de37a6f (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • bde441e First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • fb1e009 (origin/RELEASE_2_13, RELEASE_2_13) Call general methods from gRbase, not graphNEL-specific ones. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-03-24 17:23:01 +0000;
  • 65bcd9d Don't call graphNEL-specific versions of functions in gRbase; call general versions. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-03-24 17:20:59 +0000;
  • 3f03646 Includes paired tests. by Paolo Martini <paolo.cavei@gmail.com> 2014-03-19 09:10:42 +0000;
  • 15b16dd Import specific functions from Rcpp even though clipper does not directly depend on Rcpp, because the maintainer of gRbase has ignored requests to fix the problem which originates in gRbase. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-03-10 21:44:15 +0000;
  • db1dcba Import specific functions from Rcpp even though clipper does not directly depend on Rcpp, because the maintainer of gRbase has ignored requests to fix the problem which originates in gRbase. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-03-10 21:43:36 +0000;
  • 1a63896 modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • a22426c load graph package before invoking it in vignette by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-11-04 19:52:59 +0000;
  • ec4ef30 rename inst/doc to vignettes, load graph package before calling function in it (in vignette) by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-23 20:27:43 +0000;
  • 644b17d bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 26c32ff Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • 1eb870a bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • b0c3685 Check for minimum sample size. by Paolo Martini <paolo.cavei@gmail.com> 2013-05-27 10:52:49 +0000;
  • 7a13d3c Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • 73a4cb4 (origin/RELEASE_2_12, RELEASE_2_12) Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • ccd1986 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • 1123a30 prunePaths deals with empty input. by Paolo Martini <paolo.cavei@gmail.com> 2013-03-18 11:39:12 +0000;
  • 9fe6b43 New function easyClip to easily perform clipper analysis. by Paolo Martini <paolo.cavei@gmail.com> 2013-03-15 14:43:26 +0000;
  • 7f98624 Documentation updates. by Paolo Martini <paolo.cavei@gmail.com> 2013-03-05 14:50:22 +0000;
  • c83adb7 New implementation of removeSelfLoop. by Paolo Martini <paolo.cavei@gmail.com> 2013-01-25 09:56:54 +0000;
  • 25cd282 graph package put in Depends. by Paolo Martini <paolo.cavei@gmail.com> 2013-01-24 16:46:38 +0000;
  • 6e948c4 Update for version 1.6.6 of gRbase. by Paolo Martini <paolo.cavei@gmail.com> 2013-01-22 17:10:21 +0000;
  • 4ceaa10 Adds clipper, casper and PathNet. by Marc Carlson <mcarlson@fhcrc.org> 2013-01-15 01:25:22 +0000;