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[![Build Status](]( [![Coverage Status](]( # `chromswitch`: An R/Bioconductor package for detecting chromatin state switches `chromswitch` implements a flexible method to detect chromatin state switches between samples in two biological conditions in a specific genomic region of interest given peaks or chromatin state calls from ChIP-seq data. # Method The `chromswitch` paper is now published _Bioinformatics_: > Selin Jessa, Claudia L Kleinman (2018). chromswitch: a flexible method to detect chromatin state switches, Bioinformatics, []( For details on the method, see the [Supplementary Methods]( # Installation `chromswitch` is available from Bioconductor at []( To install the package from the R console: ```r install.packages("BiocManager") BiocManager::install("chromswitch") ``` For an introduction to the package, check out the [vignette](, or open it from the R console: ``` browseVignettes("chromswitch") ``` # Issues Bug reports and issues are welcome, please [open an issue]( in the GitHub repository.