Graph ofchromstaR
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  • 18c031d (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:13:56 -0400;
  • a38e62b (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:13:56 -0400;
  • 195248f bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:33:04 +0000;
  • 5f6ba7e (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:33:04 +0000;
  • 79057fd example explanation for enrichment: combinations by ataudt <aaron.taudt@gmail.com> 2021-12-15 03:44:02 +0100;
  • f2d6332 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-20 23:22:12 -0500;
  • 1e05d32 version bump 1.21.3 by ataudt <aaron.taudt@gmail.com> 2021-11-03 09:36:29 +0100;
  • b8ef93b (origin/RELEASE_3_14, RELEASE_3_14) ensembl issue by ataudt <aaron.taudt@gmail.com> 2021-11-03 09:34:25 +0100;
  • 7d7864e useEnsembl instead of useMart by ataudt <aaron.taudt@gmail.com> 2021-11-03 09:09:24 +0100;
  • e795557 version bump to 1.20.2 by ataudt <aaron.taudt@gmail.com> 2021-11-01 11:11:48 +0100;
  • d48bf47 version bump to 1.20.0 by ataudt <aaron.taudt@gmail.com> 2021-11-01 11:11:04 +0100;
  • 15067bd version bump to 1.19.1 by ataudt <aaron.taudt@gmail.com> 2021-11-01 11:10:06 +0100;
  • 82c045e version bump by ataudt <aaron.taudt@gmail.com> 2021-11-01 11:03:34 +0100;
  • 2073ecb bugfix variable by ataudt <aaron.taudt@gmail.com> 2021-10-29 09:56:33 +0200;
  • ff40286 bugfix variable by ataudt <aaron.taudt@gmail.com> 2021-10-29 09:55:01 +0200;
  • 814e1c6 version bump to 1.20.1 by ataudt <aaron.taudt@gmail.com> 2021-10-29 09:43:53 +0200;
  • 44d7f8c version bump to 1.19.1 by ataudt <aaron.taudt@gmail.com> 2021-10-29 09:43:00 +0200;
  • 036206e version bump to 1.21.1 by ataudt <aaron.taudt@gmail.com> 2021-10-29 09:39:46 +0200;
  • 725820b Merge branch 'master' of git.bioconductor.org:packages/chromstaR by ataudt <aaron.taudt@gmail.com> 2021-10-29 09:36:55 +0200;
  • d60467a fixed ensembl host issue by ataudt <aaron.taudt@gmail.com> 2021-10-29 09:35:49 +0200;
  • 1c6a0df bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:28:36 +0000;
  • 39cb3f8 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:28:36 +0000;
  • d307c74 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:21:16 +0000;
  • 8f44dd4 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:21:16 +0000;
  • 16c0394 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:15:35 -0400;
  • b2bacfd (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:15:35 -0400;
  • 25d403a bumped version to 1.15.2 by ataudt <aaron.taudt@gmail.com> 2020-10-23 20:05:54 +0200;
  • 9d24b30 added bugfix to NEWS by ataudt <aaron.taudt@gmail.com> 2020-10-23 20:04:59 +0200;
  • 1eda309 corrected check for experiment.table by ataudt <aaron.taudt@gmail.com> 2020-10-23 19:54:22 +0200;
  • b8230a3 merged with v14.1 from Bioc by ataudt <aaron.taudt@gmail.com> 2020-04-30 09:08:46 +0200;
  • 10a58b9 (origin/RELEASE_3_11, RELEASE_3_11) small bugfix by ataudt <aaron.taudt@gmail.com> 2020-04-30 08:59:54 +0200;
  • 606ba10 updated NEWS by ataudt <aaron.taudt@gmail.com> 2020-04-30 00:17:45 +0200;
  • 95106ba replaced class()=='x' with is(,x) by ataudt <aaron.taudt@gmail.com> 2020-04-30 00:16:33 +0200;
  • 18ce4ae version bump to 1.15.1 by ataudt <aaron.taudt@gmail.com> 2020-04-29 22:01:13 +0200;
  • 0780a96 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:58:42 +0000;
  • 322d5c3 bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:58:42 +0000;
  • 4524e7a version bump to 1.13.3 by ataudt <aaron.taudt@gmail.com> 2020-04-18 20:33:54 +0200;
  • f037158 version change to 1.13.1 by ataudt <aaron.taudt@gmail.com> 2020-04-18 20:28:35 +0200;
  • 84010fb bugfix fetchExtendenChromInfoFromUCSC -> getChromInfoFromUCSC by ataudt <aaron.taudt@gmail.com> 2020-04-11 20:36:05 +0200;
  • ee25808 bumped version to 1.13.1 by ataudt <aaron.taudt@gmail.com> 2020-03-17 15:29:03 +0100;
  • 7265b82 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:41:41 -0400;
  • b37e9bf (origin/RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:48 -0400;
  • 7622f73 The %in% generic is now defined in the BiocGenerics package by Hervé Pagès <hpages@fredhutch.org> 2019-10-02 22:54:53 -0700;
  • 9bda87f bugfix for export empty univariate peaks by ataudt <aaron.taudt@gmail.com> 2019-05-27 10:49:37 +0200;
  • 1a14945 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:13:41 -0400;
  • 78fa695 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:02 -0400;
  • 0562cf8 bugfix for export of empty peaks by ataudt <aaron.taudt@gmail.com> 2019-02-18 20:36:18 +0100;
  • ff7f40f version bump to 1.9.2 by ataudt <aaron.taudt@gmail.com> 2019-02-18 20:15:08 +0100;
  • 09f0d11 Merge branch 'master' of git.bioconductor.org:packages/chromstaR by ataudt <aaron.taudt@gmail.com> 2019-02-18 20:13:28 +0100;
  • 0859f66 bugfix for export of empty peaks by ataudt <aaron.taudt@gmail.com> 2019-02-18 20:13:01 +0100;
  • 2d75cac (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:25:27 -0500;
  • 3b065a3 Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:25:13 -0500;
  • c751951 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:36 -0400;
  • b5c5272 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:01 -0400;
  • 2f50210 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:46:09 -0400;
  • 4f39570 removed unneeded man page by ataudt <aaron.taudt@gmail.com> 2018-07-22 08:12:08 +0200;
  • f692575 (origin/RELEASE_3_7, RELEASE_3_7) bumped version to 1.6.2 by ataudt <aaron.taudt@gmail.com> 2018-07-19 16:10:57 +0200;
  • 20fa517 removed man page for importChromHMMsegmentation by ataudt <aaron.taudt@gmail.com> 2018-07-18 11:51:58 +0200;
  • 18d22ce update RELEASE version to 1.6.1 by ataudt <aaron.taudt@gmail.com> 2018-07-14 15:39:28 +0200;
  • 98225aa adjustments for chromHMM compatibility by ataudt <aaron.taudt@gmail.com> 2018-07-16 11:41:54 +0200;
  • 6780150 adjustments for chromHMM compatibility by ataudt <aaron.taudt@gmail.com> 2018-07-16 11:41:54 +0200;
  • 0bd289b bugfixes in version 1.7.2 by ataudt <aaron.taudt@gmail.com> 2018-07-14 15:39:28 +0200;
  • 8cf5dfb version bump to 1.7.1 by ataudt <aaron.taudt@gmail.com> 2018-05-02 07:54:51 +0200;
  • 1d3bc9d bumped version to 1.7.0 by ataudt <aaron.taudt@gmail.com> 2018-05-02 07:47:00 +0200;
  • afad239 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:42 -0400;
  • 41be13a bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:42 -0400;
  • e896930 small improvement for plotGenomeBrowser by ataudt <aaron.taudt@gmail.com> 2018-04-18 12:03:26 +0200;
  • f696a25 changePostCutoff works for univariate peak calls without keep.posteriors=TRUE by ataudt <aaron.taudt@gmail.com> 2018-04-18 10:41:49 +0200;
  • 7c69071 corrected help file links by ataudt <aaron.taudt@gmail.com> 2018-04-18 10:06:33 +0200;
  • 92b01ba fixed file links in man pages by ataudt <aaron.taudt@gmail.com> 2018-04-13 10:36:17 +0200;
  • 6c3a80c references.bib -> references for latex output by ataudt <aaron.taudt@gmail.com> 2018-04-11 11:04:37 +0200;
  • 17819a5 small bugfix by chakalakka <a.s.taudt@umcg.nl> 2018-04-03 09:06:01 +0200;
  • dca177f bugfix that bins have only specified seqlevels and not all by chakalakka <a.s.taudt@umcg.nl> 2018-03-22 11:14:52 +0100;
  • bc92334 calculate mapping only for existing states in mode=full by Akshaya Ramakrishnan <akshaya@Akshayas-MacBook-Pro.local> 2018-03-13 15:57:39 +0100;
  • 81159b0 fixed typo in filename for plot, mode=full by chakalakka <a.s.taudt@umcg.nl> 2018-03-06 11:02:51 +0100;
  • 501db53 Merge pull request <a href="#9">#9</a> from ataudt/maxPostInPeak by ataudt <7465392+ataudt@users.noreply.github.com> 2018-02-20 16:23:15 +0100;
  • 336e763 updated vignette, tried HTML vignette by chakalakka <a.s.taudt@umcg.nl> 2018-02-20 16:17:53 +0100;
  • 468e5cb added plotGenomeBrowser to vignette by chakalakka <a.s.taudt@umcg.nl> 2018-02-19 15:12:06 +0100;
  • bf64eec more galaxy fixes, updated docs for chromstar objects by chakalakka <a.s.taudt@umcg.nl> 2018-02-17 16:11:32 +0100;
  • d961e30 more galaxy fixes by chakalakka <a.s.taudt@umcg.nl> 2018-02-17 12:14:25 +0100;
  • 920dedf make chromstaR galaxy-wrapper compatible by chakalakka <a.s.taudt@umcg.nl> 2018-02-17 10:06:26 +0100;
  • 0dbcedb renamed adjustSensitivity to changeMaxPostCutoff by chakalakka <a.s.taudt@umcg.nl> 2018-02-15 11:05:19 +0100;
  • 593d54e bugfix if only one uniHMM is analyzed in callPeaksMultivarite by chakalakka <a.s.taudt@umcg.nl> 2018-02-15 10:34:03 +0100;
  • c530858 bugfix in column naming after segmentation by ICB Aaron Taudt <aaron.taudt@heidi.scidom.de> 2018-02-15 09:26:29 +0100;
  • 79f43ea small fixes by chakalakka <a.s.taudt@umcg.nl> 2018-02-15 08:57:37 +0100;
  • 8dd8bcc maxPostInPeak now calculated on segments by chakalakka <a.s.taudt@umcg.nl> 2018-02-14 15:33:48 +0100;
  • c575453 removed plotKaryogram and ggbio dependency by chakalakka <a.s.taudt@umcg.nl> 2018-02-14 10:44:01 +0100;
  • af4eb95 removed plotKaryogram and ggbio dependency by chakalakka <a.s.taudt@umcg.nl> 2018-02-14 10:33:41 +0100;
  • 8f4f5e8 added maxPostInPeak by chakalakka <a.s.taudt@umcg.nl> 2018-02-14 10:14:58 +0100;
  • 85779d1 pass check by chakalakka <a.s.taudt@umcg.nl> 2018-02-01 12:05:52 +0100;
  • 51128ee correct naming with parameters binsize and stepsize by chakalakka <a.s.taudt@umcg.nl> 2018-02-01 09:49:05 +0100;
  • 46810a9 updated news by chakalakka <a.s.taudt@umcg.nl> 2018-01-31 16:27:31 +0100;
  • edb5fd0 version bump to 1.5.1 by chakalakka <a.s.taudt@umcg.nl> 2018-01-31 16:26:06 +0100;
  • c111c05 merge with v1.5.0 by chakalakka <a.s.taudt@umcg.nl> 2018-01-31 16:25:16 +0100;
  • b757502 modified stateswap to take weight into account by chakalakka <a.s.taudt@umcg.nl> 2018-01-31 16:10:57 +0100;
  • 883d045 fixed bug in calculatePeakScores by chakalakka <a.s.taudt@umcg.nl> 2018-01-30 12:11:57 +0100;
  • 4c0a2bd removed posteriorScores by chakalakka <a.s.taudt@umcg.nl> 2017-11-25 22:30:37 +0100;
  • e0955ad added bioc tags by chakalakka <a.s.taudt@umcg.nl> 2017-11-25 16:11:54 +0100;
  • 7b7c59d added bioc tags by chakalakka <a.s.taudt@umcg.nl> 2017-11-25 16:10:58 +0100;
  • 08fdf2d BED-6 for peaks instead of BED-9 by chakalakka <a.s.taudt@umcg.nl> 2017-11-25 15:33:16 +0100;