- chromstaR
- Graph
- 18c031d
(HEAD -> master, origin/master, origin/HEAD)
bump x.y.z version to odd y following creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2022-11-01 11:13:56 -0400;
- a38e62b
(origin/RELEASE_3_16, RELEASE_3_16)
bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2022-11-01 11:13:56 -0400;
- 195248f
bump x.y.z version to odd y following creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2022-04-26 15:33:04 +0000;
- 5f6ba7e
(origin/RELEASE_3_15, RELEASE_3_15)
bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2022-04-26 15:33:04 +0000;
- 79057fd
example explanation for enrichment: combinations by
ataudt <aaron.taudt@gmail.com>
2021-12-15 03:44:02 +0100;
- f2d6332
Pass serialized S4 instances thru updateObject() by
Hervé Pagès <hpages.on.github@gmail.com>
2021-11-20 23:22:12 -0500;
- 1e05d32
version bump 1.21.3 by
ataudt <aaron.taudt@gmail.com>
2021-11-03 09:36:29 +0100;
- b8ef93b
(origin/RELEASE_3_14, RELEASE_3_14)
ensembl issue by
ataudt <aaron.taudt@gmail.com>
2021-11-03 09:34:25 +0100;
- 7d7864e
useEnsembl instead of useMart by
ataudt <aaron.taudt@gmail.com>
2021-11-03 09:09:24 +0100;
-
- e795557
version bump to 1.20.2 by
ataudt <aaron.taudt@gmail.com>
2021-11-01 11:11:48 +0100;
- d48bf47
version bump to 1.20.0 by
ataudt <aaron.taudt@gmail.com>
2021-11-01 11:11:04 +0100;
- 15067bd
version bump to 1.19.1 by
ataudt <aaron.taudt@gmail.com>
2021-11-01 11:10:06 +0100;
- 82c045e
version bump by
ataudt <aaron.taudt@gmail.com>
2021-11-01 11:03:34 +0100;
- 2073ecb
bugfix variable by
ataudt <aaron.taudt@gmail.com>
2021-10-29 09:56:33 +0200;
- ff40286
bugfix variable by
ataudt <aaron.taudt@gmail.com>
2021-10-29 09:55:01 +0200;
- 814e1c6
version bump to 1.20.1 by
ataudt <aaron.taudt@gmail.com>
2021-10-29 09:43:53 +0200;
- 44d7f8c
version bump to 1.19.1 by
ataudt <aaron.taudt@gmail.com>
2021-10-29 09:43:00 +0200;
-
- 036206e
version bump to 1.21.1 by
ataudt <aaron.taudt@gmail.com>
2021-10-29 09:39:46 +0200;
- 725820b
Merge branch 'master' of git.bioconductor.org:packages/chromstaR by
ataudt <aaron.taudt@gmail.com>
2021-10-29 09:36:55 +0200;
-
- d60467a
fixed ensembl host issue by
ataudt <aaron.taudt@gmail.com>
2021-10-29 09:35:49 +0200;
- 1c6a0df
bump x.y.z version to odd y following creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-10-26 16:28:36 +0000;
- 39cb3f8
bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-10-26 16:28:36 +0000;
- d307c74
bump x.y.z version to odd y following creation of RELEASE_3_13 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-05-19 16:21:16 +0000;
- 8f44dd4
(origin/RELEASE_3_13, RELEASE_3_13)
bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-05-19 16:21:16 +0000;
- 16c0394
bump x.y.z version to odd y following creation of RELEASE_3_12 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2020-10-27 11:15:35 -0400;
- b2bacfd
(origin/RELEASE_3_12, RELEASE_3_12)
bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2020-10-27 11:15:35 -0400;
-
- 25d403a
bumped version to 1.15.2 by
ataudt <aaron.taudt@gmail.com>
2020-10-23 20:05:54 +0200;
- 9d24b30
added bugfix to NEWS by
ataudt <aaron.taudt@gmail.com>
2020-10-23 20:04:59 +0200;
- 1eda309
corrected check for experiment.table by
ataudt <aaron.taudt@gmail.com>
2020-10-23 19:54:22 +0200;
- b8230a3
merged with v14.1 from Bioc by
ataudt <aaron.taudt@gmail.com>
2020-04-30 09:08:46 +0200;
-
- 10a58b9
(origin/RELEASE_3_11, RELEASE_3_11)
small bugfix by
ataudt <aaron.taudt@gmail.com>
2020-04-30 08:59:54 +0200;
- 606ba10
updated NEWS by
ataudt <aaron.taudt@gmail.com>
2020-04-30 00:17:45 +0200;
- 95106ba
replaced class()=='x' with is(,x) by
ataudt <aaron.taudt@gmail.com>
2020-04-30 00:16:33 +0200;
- 18ce4ae
version bump to 1.15.1 by
ataudt <aaron.taudt@gmail.com>
2020-04-29 22:01:13 +0200;
- 0780a96
bump x.y.z version to odd y following creation of RELEASE_3_11 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2020-04-27 18:58:42 +0000;
-
- 322d5c3
bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2020-04-27 18:58:42 +0000;
- 4524e7a
version bump to 1.13.3 by
ataudt <aaron.taudt@gmail.com>
2020-04-18 20:33:54 +0200;
- f037158
version change to 1.13.1 by
ataudt <aaron.taudt@gmail.com>
2020-04-18 20:28:35 +0200;
- 84010fb
bugfix fetchExtendenChromInfoFromUCSC -> getChromInfoFromUCSC by
ataudt <aaron.taudt@gmail.com>
2020-04-11 20:36:05 +0200;
- ee25808
bumped version to 1.13.1 by
ataudt <aaron.taudt@gmail.com>
2020-03-17 15:29:03 +0100;
- 7265b82
bump x.y.z version to odd y after creation of RELEASE_3_10 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2019-10-29 13:41:41 -0400;
- b37e9bf
(origin/RELEASE_3_10)
bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2019-10-29 13:09:48 -0400;
- 7622f73
The %in% generic is now defined in the BiocGenerics package by
Hervé Pagès <hpages@fredhutch.org>
2019-10-02 22:54:53 -0700;
- 9bda87f
bugfix for export empty univariate peaks by
ataudt <aaron.taudt@gmail.com>
2019-05-27 10:49:37 +0200;
- 1a14945
bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2019-05-02 12:13:41 -0400;
- 78fa695
(origin/RELEASE_3_9, RELEASE_3_9)
bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2019-05-02 11:54:02 -0400;
- 0562cf8
bugfix for export of empty peaks by
ataudt <aaron.taudt@gmail.com>
2019-02-18 20:36:18 +0100;
- ff7f40f
version bump to 1.9.2 by
ataudt <aaron.taudt@gmail.com>
2019-02-18 20:15:08 +0100;
- 09f0d11
Merge branch 'master' of git.bioconductor.org:packages/chromstaR by
ataudt <aaron.taudt@gmail.com>
2019-02-18 20:13:28 +0100;
-
- 0859f66
bugfix for export of empty peaks by
ataudt <aaron.taudt@gmail.com>
2019-02-18 20:13:01 +0100;
- 2d75cac
(origin/RELEASE_3_8, RELEASE_3_8)
Add ImmunoOncology biocViews term by
Kayla-Morrell <kayla.morrell@roswellpark.org>
2019-01-04 13:25:27 -0500;
- 3b065a3
Add ImmunoOncology biocViews term by
Kayla-Morrell <kayla.morrell@roswellpark.org>
2019-01-04 13:25:13 -0500;
- c751951
bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by
vobencha <vobencha@gmail.com>
2018-10-30 11:54:36 -0400;
-
- b5c5272
bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by
vobencha <vobencha@gmail.com>
2018-10-30 11:42:01 -0400;
- 2f50210
replace BiocInstaller biocLite mentions with BiocManager by
LiNk-NY <mramos09@gmail.com>
2018-08-30 13:46:09 -0400;
-
- 4f39570
removed unneeded man page by
ataudt <aaron.taudt@gmail.com>
2018-07-22 08:12:08 +0200;
- f692575
(origin/RELEASE_3_7, RELEASE_3_7)
bumped version to 1.6.2 by
ataudt <aaron.taudt@gmail.com>
2018-07-19 16:10:57 +0200;
- 20fa517
removed man page for importChromHMMsegmentation by
ataudt <aaron.taudt@gmail.com>
2018-07-18 11:51:58 +0200;
- 18d22ce
update RELEASE version to 1.6.1 by
ataudt <aaron.taudt@gmail.com>
2018-07-14 15:39:28 +0200;
- 98225aa
adjustments for chromHMM compatibility by
ataudt <aaron.taudt@gmail.com>
2018-07-16 11:41:54 +0200;
- 6780150
adjustments for chromHMM compatibility by
ataudt <aaron.taudt@gmail.com>
2018-07-16 11:41:54 +0200;
- 0bd289b
bugfixes in version 1.7.2 by
ataudt <aaron.taudt@gmail.com>
2018-07-14 15:39:28 +0200;
- 8cf5dfb
version bump to 1.7.1 by
ataudt <aaron.taudt@gmail.com>
2018-05-02 07:54:51 +0200;
- 1d3bc9d
bumped version to 1.7.0 by
ataudt <aaron.taudt@gmail.com>
2018-05-02 07:47:00 +0200;
-
- afad239
bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by
vobencha <valerie.obenchain@roswellpark.org>
2018-04-30 10:41:42 -0400;
-
- 41be13a
bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by
vobencha <valerie.obenchain@roswellpark.org>
2018-04-30 10:35:42 -0400;
- e896930
small improvement for plotGenomeBrowser by
ataudt <aaron.taudt@gmail.com>
2018-04-18 12:03:26 +0200;
- f696a25
changePostCutoff works for univariate peak calls without keep.posteriors=TRUE by
ataudt <aaron.taudt@gmail.com>
2018-04-18 10:41:49 +0200;
-
- 7c69071
corrected help file links by
ataudt <aaron.taudt@gmail.com>
2018-04-18 10:06:33 +0200;
- 92b01ba
fixed file links in man pages by
ataudt <aaron.taudt@gmail.com>
2018-04-13 10:36:17 +0200;
- 6c3a80c
references.bib -> references for latex output by
ataudt <aaron.taudt@gmail.com>
2018-04-11 11:04:37 +0200;
- 17819a5
small bugfix by
chakalakka <a.s.taudt@umcg.nl>
2018-04-03 09:06:01 +0200;
- dca177f
bugfix that bins have only specified seqlevels and not all by
chakalakka <a.s.taudt@umcg.nl>
2018-03-22 11:14:52 +0100;
- bc92334
calculate mapping only for existing states in mode=full by
Akshaya Ramakrishnan <akshaya@Akshayas-MacBook-Pro.local>
2018-03-13 15:57:39 +0100;
- 81159b0
fixed typo in filename for plot, mode=full by
chakalakka <a.s.taudt@umcg.nl>
2018-03-06 11:02:51 +0100;
- 501db53
Merge pull request <a href="#9">#9</a> from ataudt/maxPostInPeak by
ataudt <7465392+ataudt@users.noreply.github.com>
2018-02-20 16:23:15 +0100;
-
- 336e763
updated vignette, tried HTML vignette by
chakalakka <a.s.taudt@umcg.nl>
2018-02-20 16:17:53 +0100;
- 468e5cb
added plotGenomeBrowser to vignette by
chakalakka <a.s.taudt@umcg.nl>
2018-02-19 15:12:06 +0100;
- bf64eec
more galaxy fixes, updated docs for chromstar objects by
chakalakka <a.s.taudt@umcg.nl>
2018-02-17 16:11:32 +0100;
- d961e30
more galaxy fixes by
chakalakka <a.s.taudt@umcg.nl>
2018-02-17 12:14:25 +0100;
- 920dedf
make chromstaR galaxy-wrapper compatible by
chakalakka <a.s.taudt@umcg.nl>
2018-02-17 10:06:26 +0100;
- 0dbcedb
renamed adjustSensitivity to changeMaxPostCutoff by
chakalakka <a.s.taudt@umcg.nl>
2018-02-15 11:05:19 +0100;
- 593d54e
bugfix if only one uniHMM is analyzed in callPeaksMultivarite by
chakalakka <a.s.taudt@umcg.nl>
2018-02-15 10:34:03 +0100;
- c530858
bugfix in column naming after segmentation by
ICB Aaron Taudt <aaron.taudt@heidi.scidom.de>
2018-02-15 09:26:29 +0100;
- 79f43ea
small fixes by
chakalakka <a.s.taudt@umcg.nl>
2018-02-15 08:57:37 +0100;
- 8dd8bcc
maxPostInPeak now calculated on segments by
chakalakka <a.s.taudt@umcg.nl>
2018-02-14 15:33:48 +0100;
- c575453
removed plotKaryogram and ggbio dependency by
chakalakka <a.s.taudt@umcg.nl>
2018-02-14 10:44:01 +0100;
- af4eb95
removed plotKaryogram and ggbio dependency by
chakalakka <a.s.taudt@umcg.nl>
2018-02-14 10:33:41 +0100;
- 8f4f5e8
added maxPostInPeak by
chakalakka <a.s.taudt@umcg.nl>
2018-02-14 10:14:58 +0100;
- 85779d1
pass check by
chakalakka <a.s.taudt@umcg.nl>
2018-02-01 12:05:52 +0100;
- 51128ee
correct naming with parameters binsize and stepsize by
chakalakka <a.s.taudt@umcg.nl>
2018-02-01 09:49:05 +0100;
- 46810a9
updated news by
chakalakka <a.s.taudt@umcg.nl>
2018-01-31 16:27:31 +0100;
- edb5fd0
version bump to 1.5.1 by
chakalakka <a.s.taudt@umcg.nl>
2018-01-31 16:26:06 +0100;
- c111c05
merge with v1.5.0 by
chakalakka <a.s.taudt@umcg.nl>
2018-01-31 16:25:16 +0100;
-
-
-
- b757502
modified stateswap to take weight into account by
chakalakka <a.s.taudt@umcg.nl>
2018-01-31 16:10:57 +0100;
- 883d045
fixed bug in calculatePeakScores by
chakalakka <a.s.taudt@umcg.nl>
2018-01-30 12:11:57 +0100;
- 4c0a2bd
removed posteriorScores by
chakalakka <a.s.taudt@umcg.nl>
2017-11-25 22:30:37 +0100;
- e0955ad
added bioc tags by
chakalakka <a.s.taudt@umcg.nl>
2017-11-25 16:11:54 +0100;
- 7b7c59d
added bioc tags by
chakalakka <a.s.taudt@umcg.nl>
2017-11-25 16:10:58 +0100;
- 08fdf2d
BED-6 for peaks instead of BED-9 by
chakalakka <a.s.taudt@umcg.nl>
2017-11-25 15:33:16 +0100;