| ... | ... |
@@ -1,7 +1,7 @@ |
| 1 | 1 |
Package: chromstaR |
| 2 | 2 |
Type: Package |
| 3 | 3 |
Title: Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data |
| 4 |
-Version: 1.7.2 |
|
| 4 |
+Version: 1.9.1 |
|
| 5 | 5 |
Author: Aaron Taudt, Maria Colome Tatche, Matthias Heinig, Minh Anh Nguyen |
| 6 | 6 |
Maintainer: Aaron Taudt <aaron.taudt@gmail.com> |
| 7 | 7 |
Description: This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses. |
| ... | ... |
@@ -36,5 +36,5 @@ BugReports: https://github.com/ataudt/chromstaR/issues |
| 36 | 36 |
License: Artistic-2.0 |
| 37 | 37 |
LazyLoad: yes |
| 38 | 38 |
VignetteBuilder: knitr |
| 39 |
-biocViews: Software, DifferentialPeakCalling, HiddenMarkovModel, ChIPSeq, HistoneModification, MultipleComparison, Sequencing, PeakDetection, ATACSeq |
|
| 39 |
+biocViews: ImmunoOncology, Software, DifferentialPeakCalling, HiddenMarkovModel, ChIPSeq, HistoneModification, MultipleComparison, Sequencing, PeakDetection, ATACSeq |
|
| 40 | 40 |
RoxygenNote: 6.0.1 |
| ... | ... |
@@ -31,8 +31,9 @@ To install the *development* version from Github, follow the steps given below. |
| 31 | 31 |
3. Open R and install all dependencies. Please ensure that you have writing permissions to install packages. Execute the following lines one by one: |
| 32 | 32 |
|
| 33 | 33 |
install.packages("devtools")
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| 34 |
- source("http://bioconductor.org/biocLite.R")
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|
| 35 |
- biocLite(c("GenomicRanges","GenomicAlignments","bamsignals"))
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|
| 34 |
+ if (!requireNamespace("BiocManager", quietly=TRUE))
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|
| 35 |
+ install.packages("BiocManager")
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|
| 36 |
+ BiocManager::install(c("GenomicRanges","GenomicAlignments","bamsignals"))
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|
| 36 | 37 |
library(devtools) |
| 37 | 38 |
install_github("ataudt/chromstaRData")
|
| 38 | 39 |
install_github("ataudt/chromstaR")
|
