Name Mode Size
..
assign_peak_segments.Rd 100644 1 kb
assign_peaks.Rd 100644 2 kb
broadenrich.Rd 100644 11 kb
calc_peak_gene_overlap.Rd 100644 2 kb
chipenrich.Rd 100644 12 kb
chipenrich_package.Rd 100644 1 kb
filter_genesets.Rd 100644 1 kb
genome_to_organism.Rd 100644 1 kb
genome_to_orgdb.Rd 100644 1 kb
get_test_method.Rd 100644 1 kb
hybridenrich.Rd 100644 7 kb
load_peaks.Rd 100644 1 kb
num_peaks_per_gene.Rd 100644 1 kb
peaks2genes.Rd 100644 8 kb
plot_chipenrich_spline.Rd 100644 3 kb
plot_dist_to_tss.Rd 100644 1 kb
plot_gene_coverage.Rd 100644 3 kb
plot_polyenrich_spline.Rd 100644 3 kb
polyenrich.Rd 100644 12 kb
post_process_enrichments.Rd 100644 1 kb
postprocess_peak_grs.Rd 100644 0 kb
proxReg.Rd 100644 9 kb
read_bed.Rd 100644 2 kb
read_geneset.Rd 100644 1 kb
read_ldef.Rd 100644 1 kb
read_mappa.Rd 100644 1 kb
recode_peaks.Rd 100644 1 kb
reset_ncores_for_windows.Rd 100644 1 kb
setup_genesets.Rd 100644 1 kb
setup_locusdef.Rd 100644 1 kb
setup_mappa.Rd 100644 1 kb
supported_genesets.Rd 100644 0 kb
supported_genomes.Rd 100644 0 kb
supported_locusdefs.Rd 100644 4 kb
supported_methods.Rd 100644 0 kb
supported_read_lengths.Rd 100644 0 kb
README.md
# ChIP-Enrich R package for gene set enrichment testing using ChIP-seq data. # Description ChIP-Enrich performs gene set enrichment testing using peaks called from a ChIP-seq experiment. The method empirically corrects for confounding factors such as the length of genes, and the mappability of the sequence surrounding genes.