Name Mode Size
..
assign_peaks.R 100644 8 kb
broadenrich.R 100644 16 kb
chipenrich.R 100755 18 kb
chipenrich_package_doc.R 100644 2 kb
constants.R 100644 1 kb
hybrid.R 100644 21 kb
peak_weights.R 100644 2 kb
peaks2genes.R 100644 13 kb
peaks_per_gene.R 100644 6 kb
plot_chipenrich_spline.R 100644 7 kb
plot_dist_to_tss.R 100644 4 kb
plot_gene_coverage.R 100644 5 kb
plot_polyenrich_spline.R 100644 7 kb
polyenrich.R 100644 20 kb
proxReg.R 100644 19 kb
randomize.R 100644 4 kb
read.R 100644 11 kb
setup.R 100644 9 kb
supported.R 100644 6 kb
test_approx.R 100644 3 kb
test_binomial.R 100644 2 kb
test_broadenrich.R 100644 3 kb
test_chipapprox.R 100644 3 kb
test_chipenrich.R 100644 3 kb
test_chipenrich_slow.R 100644 3 kb
test_fisher.R 100644 2 kb
test_polyapprox.R 100644 3 kb
test_polyenrich.R 100644 2 kb
test_polyenrich_slow.R 100644 2 kb
test_polyenrich_weighted.R 100644 3 kb
test_proxReg.R 100644 3 kb
utils.R 100644 5 kb
README.md
# ChIP-Enrich R package for gene set enrichment testing using ChIP-seq data. # Description ChIP-Enrich performs gene set enrichment testing using peaks called from a ChIP-seq experiment. The method empirically corrects for confounding factors such as the length of genes, and the mappability of the sequence surrounding genes.