1. celda
  2. .travis.yml
Browse code

Added GitHub workflows and removed Travis yml

Joshua D. Campbell authored on 12/09/2021 16:05:59
Showing 1 changed files
.travis.yml
History View file @ 27ad2958
1 1 
deleted file mode 100644
... ... 
@@ -1,26 +0,0 @@
1 
-language: r
2 
-cache: packages
3 
-sudo: false
4 
-warnings_are_errors: false
5 
-bioc_required: true
6 
-r_build_args: "--no-build-vignettes"
7 
-r_check_args: "--no-vignettes --no-build-vignettes --as-cran"
8 
-notifications:
9 
-  slack:
10 
-    secure: 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
11 
-
12 
-r_github_packages:
13 
-  - r-lib/covr
14 
-  - jimhester/lintr
15 
-  - spatstat/spatstat@v1.64-1
16 
-after_success:
17 
-  - R CMD INSTALL $PKG_TARBALL
18 
-  - Rscript -e 'covr::coveralls()'
19 
-  - Rscript -e 'library(lintr); lint_package(linters = with_defaults(object_length_linter(length = 40L), object_name_linter = NULL, commented_code_linter = NULL, object_usage_linter = NULL, cyclocomp_linter(complexity_limit = 100)), exclusions = list("R/RcppExports.R"))'
20 
-
21 
-addons:
22 
-  apt:
23 
-    sources:
24 
-    - sourceline: 'ppa:opencpu/imagemagick'
25 
-    packages:
26 
-    - libmagick++-dev
Browse code

package update

Joshua D. Campbell authored on 15/03/2021 21:18:11
Showing 1 changed files
.travis.yml
History View file @ 593808d1
... ... 
@@ -12,7 +12,7 @@ notifications:
12 12 
 r_github_packages:
13 13 
   - r-lib/covr
14 14 
   - jimhester/lintr
15 
-  - spatstat/spatstat@66c4540
15 
+  - spatstat/spatstat@v1.64-1
16 16 
 after_success:
17 17 
   - R CMD INSTALL $PKG_TARBALL
18 18 
   - Rscript -e 'covr::coveralls()'
Browse code

package update

Joshua D. Campbell authored on 15/03/2021 20:53:06
Showing 1 changed files
.travis.yml
History View file @ 723e3b76
... ... 
@@ -12,6 +12,7 @@ notifications:
12 12 
 r_github_packages:
13 13 
   - r-lib/covr
14 14 
   - jimhester/lintr
15 
+  - spatstat/spatstat@66c4540
15 16 
 after_success:
16 17 
   - R CMD INSTALL $PKG_TARBALL
17 18 
   - Rscript -e 'covr::coveralls()'
Browse code

add addons to .travis.yml to fix magick error on TRAVIS CI

zhewa authored on 30/09/2020 02:14:11
Showing 1 changed files
.travis.yml
History View file @ 5675c7e3
... ... 
@@ -16,3 +16,10 @@ after_success:
16 16 
   - R CMD INSTALL $PKG_TARBALL
17 17 
   - Rscript -e 'covr::coveralls()'
18 18 
   - Rscript -e 'library(lintr); lint_package(linters = with_defaults(object_length_linter(length = 40L), object_name_linter = NULL, commented_code_linter = NULL, object_usage_linter = NULL, cyclocomp_linter(complexity_limit = 100)), exclusions = list("R/RcppExports.R"))'
19 
+
20 
+addons:
21 
+  apt:
22 
+    sources:
23 
+    - sourceline: 'ppa:opencpu/imagemagick'
24 
+    packages:
25 
+    - libmagick++-dev
Browse code

remove before_install: update.pacakges

zhewa authored on 29/09/2020 20:46:15
Showing 1 changed files
.travis.yml
History View file @ f0691bed
... ... 
@@ -3,8 +3,6 @@ cache: packages
3 3 
 sudo: false
4 4 
 warnings_are_errors: false
5 5 
 bioc_required: true
6 
-before_install:
7 
-  - Rscript -e 'update.packages(ask = FALSE)'
8 6 
 r_build_args: "--no-build-vignettes"
9 7 
 r_check_args: "--no-vignettes --no-build-vignettes --as-cran"
10 8 
 notifications:
Browse code

remove dist: trusty

zhewa authored on 29/09/2020 20:32:55
Showing 1 changed files
.travis.yml
History View file @ cadbfa7c
... ... 
@@ -1,6 +1,5 @@
1 1 
 language: r
2 2 
 cache: packages
3 
-dist: trusty
4 3 
 sudo: false
5 4 
 warnings_are_errors: false
6 5 
 bioc_required: true
Browse code

merged vignette fixes

Joshua D. Campbell authored on 13/03/2020 00:44:31
Showing 0 changed files
Browse code

unscript

Joshua D. Campbell authored on 02/03/2020 15:20:52
Showing 1 changed files
.travis.yml
History View file @ 9282e176
... ... 
@@ -4,7 +4,6 @@ dist: trusty
4 4 
 sudo: false
5 5 
 warnings_are_errors: false
6 6 
 bioc_required: true
7 
-script: true
8 7 
 before_install:
9 8 
   - Rscript -e 'update.packages(ask = FALSE)'
10 9 
 r_build_args: "--no-build-vignettes"
Browse code

script

Joshua D. Campbell authored on 02/03/2020 15:11:17
Showing 1 changed files
.travis.yml
History View file @ 64bf0dee
... ... 
@@ -4,6 +4,7 @@ dist: trusty
4 4 
 sudo: false
5 5 
 warnings_are_errors: false
6 6 
 bioc_required: true
7 
+script: true
7 8 
 before_install:
8 9 
   - Rscript -e 'update.packages(ask = FALSE)'
9 10 
 r_build_args: "--no-build-vignettes"
Browse code

Updated docs. Fixed package referncing in celdaMarkerPlot. Updated DESCRIPTION.

Joshua D. Campbell authored on 02/03/2020 04:51:11
Showing 1 changed files
.travis.yml
History View file @ 8374c3f6
... ... 
@@ -15,6 +15,7 @@ notifications:
15 15 
 r_github_packages:
16 16 
   - r-lib/covr
17 17 
   - jimhester/lintr
18 
+  - LTLA/BiocNeighbors
18 19 
 after_success:
19 20 
   - R CMD INSTALL $PKG_TARBALL
20 21 
   - Rscript -e 'covr::coveralls()'
Browse code

travis

Joshua D. Campbell authored on 11/02/2020 20:45:38
Showing 1 changed files
.travis.yml
History View file @ ee75d161
... ... 
@@ -4,12 +4,6 @@ dist: trusty
4 4 
 sudo: false
5 5 
 warnings_are_errors: false
6 6 
 bioc_required: true
7 
-jobs:
8 
-  include:
9 
-    - stage: prepare cache
10 
-      script: true
11 
-    - stage: run
12 
-      script: false
13 7 
 before_install:
14 8 
   - Rscript -e 'update.packages(ask = FALSE)'
15 9 
 r_build_args: "--no-build-vignettes"
Browse code

travis

Joshua D. Campbell authored on 11/02/2020 20:06:50
Showing 1 changed files
.travis.yml
History View file @ de473e62
... ... 
@@ -8,7 +8,8 @@ jobs:
8 8 
   include:
9 9 
     - stage: prepare cache
10 10 
       script: true
11 
-    - stage: test
11 
+    - stage: run
12 
+      script: false
12 13 
 before_install:
13 14 
   - Rscript -e 'update.packages(ask = FALSE)'
14 15 
 r_build_args: "--no-build-vignettes"
Browse code

travis

Joshua D. Campbell authored on 11/02/2020 19:08:10
Showing 1 changed files
.travis.yml
History View file @ 84a98a7d
... ... 
@@ -6,10 +6,9 @@ warnings_are_errors: false
6 6 
 bioc_required: true
7 7 
 jobs:
8 8 
   include:
9 
-    - stage: precache
9 
+    - stage: prepare cache
10 10 
       script: true
11 11 
     - stage: test
12 
-      test: true
13 12 
 before_install:
14 13 
   - Rscript -e 'update.packages(ask = FALSE)'
15 14 
 r_build_args: "--no-build-vignettes"
Browse code

travis

Joshua D. Campbell authored on 11/02/2020 18:57:38
Showing 1 changed files
.travis.yml
History View file @ 155e2dfe
... ... 
@@ -8,7 +8,8 @@ jobs:
8 8 
   include:
9 9 
     - stage: precache
10 10 
       script: true
11 
-    - test
11 
+    - stage: test
12 
+      test: true
12 13 
 before_install:
13 14 
   - Rscript -e 'update.packages(ask = FALSE)'
14 15 
 r_build_args: "--no-build-vignettes"
Browse code

added test stage

Joshua D. Campbell authored on 11/02/2020 18:37:52
Showing 1 changed files
.travis.yml
History View file @ ffc4e238
... ... 
@@ -8,6 +8,7 @@ jobs:
8 8 
   include:
9 9 
     - stage: precache
10 10 
       script: true
11 
+    - test
11 12 
 before_install:
12 13 
   - Rscript -e 'update.packages(ask = FALSE)'
13 14 
 r_build_args: "--no-build-vignettes"
Browse code

Added step to warm up the cache

Joshua D. Campbell authored on 11/02/2020 16:55:20
Showing 1 changed files
.travis.yml
History View file @ d7cdc67c
... ... 
@@ -4,6 +4,10 @@ dist: trusty
4 4 
 sudo: false
5 5 
 warnings_are_errors: false
6 6 
 bioc_required: true
7 
+jobs:
8 
+  include:
9 
+    - stage: precache
10 
+      script: true
7 11 
 before_install:
8 12 
   - Rscript -e 'update.packages(ask = FALSE)'
9 13 
 r_build_args: "--no-build-vignettes"
Browse code

Manually point to Seurat github install

Joshua D. Campbell authored on 11/02/2020 03:10:01
Showing 1 changed files
.travis.yml
History View file @ 52abeb86
... ... 
@@ -15,6 +15,7 @@ notifications:
15 15 
 r_github_packages:
16 16 
   - r-lib/covr
17 17 
   - jimhester/lintr
18 
+  - satijalab/seurat
18 19 
 after_success:
19 20 
   - R CMD INSTALL $PKG_TARBALL
20 21 
   - Rscript -e 'covr::coveralls()'
Browse code

Changed lint settings and removed R devel

Joshua D. Campbell authored on 22/01/2020 03:18:20
Showing 1 changed files
.travis.yml
History View file @ cabf62a3
... ... 
@@ -1,7 +1,5 @@
1 1 
 language: r
2 2 
 cache: packages
3 
-r:
4 
-  - devel
5 3 
 dist: trusty
6 4 
 sudo: false
7 5 
 warnings_are_errors: false
... ... 
@@ -20,4 +18,4 @@ r_github_packages:
20 18 
 after_success:
21 19 
   - R CMD INSTALL $PKG_TARBALL
22 20 
   - Rscript -e 'covr::coveralls()'
23 
-  - Rscript -e 'library(lintr); lint_package(linters = with_defaults(object_length_linter(length = 40L), object_name_linter = NULL, commented_code_linter = NULL, object_usage_linter = NULL, cyclocomp_linter(complexity_limit = 40)), exclusions = list("R/RcppExports.R"))'
21 
+  - Rscript -e 'library(lintr); lint_package(linters = with_defaults(object_length_linter(length = 40L), object_name_linter = NULL, commented_code_linter = NULL, object_usage_linter = NULL, cyclocomp_linter(complexity_limit = 100)), exclusions = list("R/RcppExports.R"))'
Browse code

test removing install of limprf

Joshua D. Campbell authored on 22/01/2020 02:48:15
Showing 1 changed files
.travis.yml
History View file @ 0651ab43
... ... 
@@ -10,10 +10,6 @@ before_install:
10 10 
   - Rscript -e 'update.packages(ask = FALSE)'
11 11 
 r_build_args: "--no-build-vignettes"
12 12 
 r_check_args: "--no-vignettes --no-build-vignettes --as-cran"
13 
-addons:
14 
-  apt:
15 
-    packages:
16 
-    - libmpfr-dev
17 13 
 notifications:
18 14 
   slack:
19 15 
     secure: 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
Browse code

reverted travis.yml

Joshua D. Campbell authored on 22/01/2020 01:01:03
Showing 1 changed files
.travis.yml
History View file @ 50db9a1e
... ... 
@@ -1,9 +1,5 @@
1 1 
 language: r
2 
-cache:
3 
-  directories:
4 
-    - $TRAVIS_BUILD_DIR/packrat/src
5 
-    - $TRAVIS_BUILD_DIR/packrat/lib
6 
-  packages: true
2 
+cache: packages
7 3 
 r:
8 4 
   - devel
9 5 
 dist: trusty
Browse code

Updated travis.yml to cache packages

Joshua D. Campbell authored on 22/01/2020 00:41:08
Showing 1 changed files
.travis.yml
History View file @ 32e4d650
... ... 
@@ -1,7 +1,4 @@
1 1 
 language: r
2 
-install:
3 
-  - R -e "0" --args --bootstrap-packrat
4 
-  - R -e "packrat::restore(restart = FALSE)"
5 2 
 cache:
6 3 
   directories:
7 4 
     - $TRAVIS_BUILD_DIR/packrat/src
Browse code

Updated travis.yml to cache packages

Joshua D. Campbell authored on 22/01/2020 00:34:18
Showing 1 changed files
.travis.yml
History View file @ 828daee9
... ... 
@@ -1,7 +1,14 @@
1 1 
 language: r
2 
+install:
3 
+  - R -e "0" --args --bootstrap-packrat
4 
+  - R -e "packrat::restore(restart = FALSE)"
5 
+cache:
6 
+  directories:
7 
+    - $TRAVIS_BUILD_DIR/packrat/src
8 
+    - $TRAVIS_BUILD_DIR/packrat/lib
9 
+  packages: true
2 10 
 r:
3 11 
   - devel
4 
-cache: packages
5 12 
 dist: trusty
6 13 
 sudo: false
7 14 
 warnings_are_errors: false
... ... 
@@ -24,4 +31,4 @@ r_github_packages:
24 31 
 after_success:
25 32 
   - R CMD INSTALL $PKG_TARBALL
26 33 
   - Rscript -e 'covr::coveralls()'
27 
-  - Rscript -e 'library(lintr); lint_package(linters = with_defaults(object_length_linter(length = 40L), object_name_linter = NULL, commented_code_linter = NULL, object_usage_linter = NULL, cyclocomp_linter(complexity_limit = 40)), exclusions = list("R/RcppExports.R"))'
28 34 
\ No newline at end of file
35 
+  - Rscript -e 'library(lintr); lint_package(linters = with_defaults(object_length_linter(length = 40L), object_name_linter = NULL, commented_code_linter = NULL, object_usage_linter = NULL, cyclocomp_linter(complexity_limit = 40)), exclusions = list("R/RcppExports.R"))'
Browse code

cyclocomp_linter(complexity_limit = 40)

87875172 authored on 18/09/2019 14:33:08
Showing 1 changed files
.travis.yml
History View file @ ed19ae07
... ... 
@@ -24,4 +24,4 @@ r_github_packages:
24 24 
 after_success:
25 25 
   - R CMD INSTALL $PKG_TARBALL
26 26 
   - Rscript -e 'covr::coveralls()'
27 
-  - Rscript -e 'library(lintr); lint_package(linters = with_defaults(object_length_linter(length = 40L), object_name_linter = NULL, commented_code_linter = NULL, object_usage_linter = NULL), exclusions = list("R/RcppExports.R"))'
28 27 
\ No newline at end of file
28 
+  - Rscript -e 'library(lintr); lint_package(linters = with_defaults(object_length_linter(length = 40L), object_name_linter = NULL, commented_code_linter = NULL, object_usage_linter = NULL, cyclocomp_linter(complexity_limit = 40)), exclusions = list("R/RcppExports.R"))'
29 29 
\ No newline at end of file
Browse code

fix lints

zhewa authored on 12/04/2019 15:46:11
Showing 1 changed files
.travis.yml
History View file @ 27fcd64f
... ... 
@@ -24,4 +24,4 @@ r_github_packages:
24 24 
 after_success:
25 25 
   - R CMD INSTALL $PKG_TARBALL
26 26 
   - Rscript -e 'covr::coveralls()'
27 
-  - Rscript -e 'library(lintr); lint_package(linters = with_defaults(object_length_linter(length = 40L), object_name_linter = NULL, commented_code_linter = NULL, object_usage_linter = NULL))'
28 27 
\ No newline at end of file
28 
+  - Rscript -e 'library(lintr); lint_package(linters = with_defaults(object_length_linter(length = 40L), object_name_linter = NULL, commented_code_linter = NULL, object_usage_linter = NULL), exclusions = list("R/RcppExports.R"))'
29 29 
\ No newline at end of file
Browse code

add lintr integration

zhewa authored on 10/04/2019 02:09:20
Showing 1 changed files
.travis.yml
History View file @ 3f6fb458
... ... 
@@ -20,5 +20,8 @@ notifications:
20 20
21 21 
 r_github_packages:
22 22 
   - r-lib/covr
23 
+  - jimhester/lintr
23 24 
 after_success:
25 
+  - R CMD INSTALL $PKG_TARBALL
24 26 
   - Rscript -e 'covr::coveralls()'
27 
+  - Rscript -e 'library(lintr); lint_package(linters = with_defaults(object_length_linter(length = 40L), object_name_linter = NULL, commented_code_linter = NULL, object_usage_linter = NULL))'
25 28 
\ No newline at end of file
Browse code

change .travis.yml R version to devel

87875172 authored on 27/03/2019 15:34:09
Showing 1 changed files
.travis.yml
History View file @ 570abed6
... ... 
@@ -1,4 +1,6 @@
1 1 
 language: r
2 
+r:
3 
+  - devel
2 4 
 cache: packages
3 5 
 dist: trusty
4 6 
 sudo: false
Browse code

Updating Travis configuration

Former-commit-id: 56ccd0901a120679364ba2e1669f9024b555d866

Sean Corbett authored on 19/10/2018 17:26:36
Showing 1 changed files
.travis.yml
History View file @ a1a66a91
... ... 
@@ -2,12 +2,12 @@ language: r
2 2 
 cache: packages
3 3 
 dist: trusty
4 4 
 sudo: false
5 
-warnings_are_errors: true
5 
+warnings_are_errors: false
6 6 
 bioc_required: true
7 7 
 before_install:
8 8 
   - Rscript -e 'update.packages(ask = FALSE)'
9 9 
 r_build_args: "--no-build-vignettes"
10 
-r_check_args: "--no-build-vignettes --as-cran"
10 
+r_check_args: "--no-vignettes --no-build-vignettes --as-cran"
11 11 
 addons:
12 12 
   apt:
13 13 
     packages:
Browse code

Putting coveralls back into Travis

Former-commit-id: c85d3c076c4bf9046a0cffc0fdc1dc7c97a8a6e5

Sean Corbett authored on 29/08/2018 06:16:47
Showing 1 changed files
.travis.yml
History View file @ bb847900
... ... 
@@ -16,7 +16,7 @@ notifications:
16 16 
   slack:
17 17 
     secure: 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
18 18
19 
-#r_github_packages:
20 
-#  - r-lib/covr
21 
-#after_success:
22 
-#  - Rscript -e 'covr::coveralls()'
19 
+r_github_packages:
20 
+  - r-lib/covr
21 
+after_success:
22 
+  - Rscript -e 'covr::coveralls()'
Browse code

Removing coveralls in build; it takes way too long.

Former-commit-id: 8816731967dddacbdffffd3f9139a7a4d29d1ad4

Sean Corbett authored on 29/08/2018 05:42:29
Showing 1 changed files
.travis.yml
History View file @ edada72b
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@@ -16,7 +16,7 @@ notifications:
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   slack:
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     secure: 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-r_github_packages:
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-  - r-lib/covr
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-after_success:
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-  - Rscript -e 'covr::coveralls()'
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+#r_github_packages:
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+#  - r-lib/covr
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+#after_success:
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+#  - Rscript -e 'covr::coveralls()'
Browse code

Fixing broken example, skipping broken unit test. Adding Coveralls.

Former-commit-id: 13cd4a49bbefdf3354bd423b90b854b9c8aa1157

Sean Corbett authored on 29/08/2018 05:16:23
Showing 1 changed files
.travis.yml
History View file @ 0f9d31d5
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@@ -15,3 +15,8 @@ addons:
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 notifications:
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   slack:
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     secure: 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+
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+r_github_packages:
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+  - r-lib/covr
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+after_success:
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+  - Rscript -e 'covr::coveralls()'
Browse code

Fix argument checking in wrapper (#269)

* Fix parameter checking code in celda wrapper.
* Removing deprecated parameter. Refactoring test.
* Updating documentation.
* Add SummarizedExperiment to Depends.
* Added _ prefix to C function names. Add data.table to namespace


Former-commit-id: f2efa67d604e95f3250f7ec6c4023f944cdcd859

Sean authored on 03/07/2018 20:25:20 • GitHub committed on 03/07/2018 20:25:20
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.travis.yml
History View file @ 49acd40a
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@@ -5,7 +5,7 @@ sudo: false
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 warnings_are_errors: true
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 bioc_required: true
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 before_install:
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-- Rscript -e 'update.packages(ask = FALSE)'
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+  - Rscript -e 'update.packages(ask = FALSE)'
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 r_build_args: "--no-build-vignettes"
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 r_check_args: "--no-build-vignettes --as-cran"
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 addons:
Browse code

Added travis slack integration, added .travis.yml to Rbuildignore

Former-commit-id: 61fae36348b6f56a7b8741b4d16dbd4e24b8d9e1

David Jenkins authored on 02/06/2017 18:35:03
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.travis.yml
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@@ -11,4 +11,7 @@ r_check_args: "--no-build-vignettes --as-cran"
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 addons:
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   apt:
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     packages:
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-    - libmpfr-dev
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\ No newline at end of file
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+    - libmpfr-dev
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+notifications:
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+  slack:
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+    secure: 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
Browse code

build and check args

Former-commit-id: 1c1696a85d1c6d909a95ad100ba4f0c46d0ef29c

David Jenkins authored on 31/05/2017 22:52:02
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.travis.yml
History View file @ acef2b82
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@@ -6,6 +6,8 @@ warnings_are_errors: true
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 bioc_required: true
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 before_install:
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 - Rscript -e 'update.packages(ask = FALSE)'
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+r_build_args: "--no-build-vignettes"
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+r_check_args: "--no-build-vignettes --as-cran"
9 11 
 addons:
10 12 
   apt:
11 13 
     packages:
Browse code

Added requirement for libmpfr-dev

Former-commit-id: e25aca009b77d37a4649c9f57f4030bfebf5e0b1

David Jenkins authored on 31/05/2017 19:26:13
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.travis.yml
History View file @ b1f724f4
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@@ -6,3 +6,7 @@ warnings_are_errors: true
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 bioc_required: true
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 before_install:
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 - Rscript -e 'update.packages(ask = FALSE)'
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+addons:
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+  apt:
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+    packages:
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+    - libmpfr-dev
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\ No newline at end of file
Browse code

Travis integration

Former-commit-id: 346147fe79e79ee71961e9cf790ad46f87e3d848

David Jenkins authored on 31/05/2017 18:59:53
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.travis.yml
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new file mode 100644
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+language: r
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+cache: packages
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+dist: trusty
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+sudo: false
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+warnings_are_errors: true
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+bioc_required: true
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+before_install:
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+- Rscript -e 'update.packages(ask = FALSE)'