new file mode 100644

@@ -0,0 +1,56 @@

+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples

+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help

+on:

+  push:

+    branches: [devel, master]

+  pull_request:

+    branches: [devel, master]

+

+name: BioC-check

+

+jobs:

+  R-CMD-check:

+    runs-on: ${{ matrix.config.os }}

+

+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

+

+    strategy:

+      fail-fast: false

+      matrix:

+        config:

+          - {os: macOS-latest,   r: 'release'}

+

+    env:

+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

+      R_KEEP_PKG_SOURCE: yes

+

+    steps:

+      - uses: actions/checkout@v2

+

+      - uses: r-lib/actions/setup-pandoc@v1

+

+      - uses: r-lib/actions/setup-r@v1

+        with:

+          r-version: ${{ matrix.config.r }}

+          http-user-agent: ${{ matrix.config.http-user-agent }}

+          use-public-rspm: true

+

+      - uses: r-lib/actions/setup-r-dependencies@v1

+        with:

+          extra-packages: rcmdcheck

+

+      - name: Install XQuartz on macOS

+        if: runner.os == 'macOS'

+        run: brew install xquartz --cask

+          

+      - name: Run BiocCheck

+        run: |

+          BiocManager::install("BiocCheck")

+          library(BiocCheck)

+          BiocCheck::BiocCheck(".",

+              `quit-with-status` = TRUE,

+              `no-check-R-ver` = TRUE,

+              `no-check-bioc-help` = TRUE

+          )

+        shell: Rscript {0}

+        

@@ -35,12 +35,16 @@ jobs:

         with:

           r-version: ${{ matrix.config.r }}

           http-user-agent: ${{ matrix.config.http-user-agent }}

-          use-public-rspm: true

+          use-public-rspm: false

       - name: Install XQuartz on macOS

         if: runner.os == 'macOS'

         run: brew install xquartz --cask

+      - name: Install fftw3 on macOS

+        if: runner.os == 'macOS'

+        run: brew install fftw

+

       - uses: r-lib/actions/setup-r-dependencies@v1

         with:

           extra-packages: rcmdcheck, tinytex