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@@ -33,6 +33,10 @@
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#' @param bgAssayName Character. Name of the assay to use if \code{background}
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#' is a \linkS4class{SingleCellExperiment}. Default to same as
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#' \code{assayName}.
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+#' @param bgBatch Numeric or chracter vector. Batch labels for
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+#' \code{background}. Its unique values should be the same as in \code{batch},
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+#' such that each batch of cells have their corresponding background batch.
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+#' Default to NULL.
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#' @param maxIter Integer. Maximum iterations of the EM algorithm. Default 500.
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#' @param convergence Numeric. The EM algorithm will be stopped if the maximum
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#' difference in the contamination estimates between the previous and
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