@@ -35,7 +35,7 @@ jobs:

         with:

           r-version: ${{ matrix.config.r }}

           http-user-agent: ${{ matrix.config.http-user-agent }}

-          use-public-rspm: false

+          use-public-rspm: true

       - name: Install XQuartz on macOS

         if: runner.os == 'macOS'

@@ -259,6 +259,7 @@ Note that the decontaminated matrix of decontX consists of floating point number

 counts <- GetAssayData(object = seuratObject, slot = "counts")

 sce <- SingleCellExperiment(list(counts = counts))

 sce <- decontX(sce)

+seuratObj[["decontXcounts"]] <- CreateAssayObject(counts = decontXcounts(sce))

 ```