@@ -55,7 +55,7 @@

 #' @importFrom doParallel registerDoParallel

 #' @importFrom methods is

 #' @examples

-#' \donttest{

+#' \dontrun{

 #' data(celdaCGSim)

 #' ## Run various combinations of parameters with 'celdaGridSearch'

 #' celdaCGGridSearchRes <- celdaGridSearch(celdaCGSim$counts,

@@ -563,7 +563,7 @@ featureModuleTable <- function(sce,

   } else {

       dn <- lapply(allGenes$index,

           FUN = function(v) {

-              rowData(sce)[[displayName]][v]

+            SummarizedExperiment::rowData(sce)[[displayName]][v]

           })

       res <- vapply(dn,

           FUN = "[",

@@ -76,7 +76,7 @@

 #' @rdname reportceldaCG

 #' @examples

 #' data(sceCeldaCG)

-#' \donttest{

+#' \dontrun{

 #' library(SingleCellExperiment)

 #' sceCeldaCG$sum <- colSums(counts(sceCeldaCG))

 #' rowData(sceCeldaCG)$rownames <- rownames(sceCeldaCG)

@@ -124,7 +124,7 @@ Run Celda with different combinations of parameters and

  but not be displayed in \code{stdout}.

 }

 \examples{

-\donttest{

+\dontrun{

 data(celdaCGSim)

 ## Run various combinations of parameters with 'celdaGridSearch'

 celdaCGGridSearchRes <- celdaGridSearch(celdaCGSim$counts,

@@ -151,7 +151,7 @@ Default \code{TRUE}.}

 }

 \examples{

 data(sceCeldaCG)

-\donttest{

+\dontrun{

 library(SingleCellExperiment)

 sceCeldaCG$sum <- colSums(counts(sceCeldaCG))

 rowData(sceCeldaCG)$rownames <- rownames(sceCeldaCG)