Package: celda Title: CEllular Latent Dirichlet Allocation Version: 1.5.8 Authors@R: c(person("Joshua", "Campbell", email = "camp@bu.edu", role = c("aut", "cre")), person("Sean", "Corbett", email = "scorbett@bu.edu", role = c("aut")), person("Yusuke", "Koga", email="ykoga07@bu.edu", role = c("aut")), person("Shiyi", "Yang", email="syyang@bu.edu", role = c("aut")), person("Eric", "Reed", email="reeder@bu.edu", role = c("aut")), person("Zhe", "Wang", email="zhe@bu.edu", role = c("aut"))) Description: Utilizing Bayesian hierarchical models to analyze single-cell genomic data. Depends: R (>= 3.6) VignetteBuilder: knitr Imports: plyr, foreach, ggplot2, RColorBrewer, grid, scales, gtable, grDevices, graphics, matrixStats, doParallel, digest, methods, reshape2, MAST, S4Vectors, data.table, Rcpp, RcppEigen, uwot, enrichR, stringi, SummarizedExperiment, MCMCprecision, ggrepel, Rtsne, withr, dendextend, ggdendro, pROC, scater (>= 1.14.4), scran, SingleCellExperiment, dbscan, DelayedArray, Seurat, stringr, Matrix, ComplexHeatmap, multipanelfigure, circlize Suggests: testthat, knitr, roxygen2, rmarkdown, biomaRt, covr, BiocManager, BiocStyle, M3DExampleData, TENxPBMCData LinkingTo: Rcpp, RcppEigen License: MIT + file LICENSE Encoding: UTF-8 LazyData: true RoxygenNote: 7.1.1 BugReports: https://github.com/campbio/celda/issues biocViews: SingleCell, GeneExpression, Clustering, Sequencing, Bayesian NeedsCompilation: yes Packaged: 2020-04-02 18:47:49 UTC; josh Author: Joshua Campbell [aut, cre], Sean Corbett [aut], Yusuke Koga [aut], Shiyi Yang [aut], Eric Reed [aut], Zhe Wang [aut] Maintainer: Joshua Campbell <camp@bu.edu>